Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759225.1:18183594-18195821[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.3e-06 0.0013 20.5 5.3 1 23 152 174 152 174 0.97

2 11 2.4e-05 0.0042 18.9 1.3 1 23 180 202 180 202 0.96

3 11 3.4e-05 0.0059 18.4 2.0 1 23 207 230 207 230 0.97

4 11 5.4e-06 0.00094 20.9 3.0 1 23 236 258 236 258 0.97

5 11 6.1e-06 0.0011 20.7 0.9 1 23 264 286 264 286 0.98

6 11 5.4e-05 0.0093 17.8 0.3 3 23 314 334 313 334 0.98

7 11 0.21 36 6.5 3.8 1 23 340 363 340 363 0.90

8 11 0.0038 0.65 12.0 2.0 1 23 370 392 370 392 0.97

9 11 5.1e-05 0.0088 17.8 0.7 1 23 398 420 398 420 0.98

10 11 0.00058 0.1 14.5 1.4 1 22 426 447 426 449 0.91

11 11 0.00022 0.038 15.8 10.9 3 23 465 485 463 485 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.3e-06	0.0013	20.5	5.3	1	23	152	174	152	174	0.97
2	11	2.4e-05	0.0042	18.9	1.3	1	23	180	202	180	202	0.96
3	11	3.4e-05	0.0059	18.4	2.0	1	23	207	230	207	230	0.97
4	11	5.4e-06	0.00094	20.9	3.0	1	23	236	258	236	258	0.97
5	11	6.1e-06	0.0011	20.7	0.9	1	23	264	286	264	286	0.98
6	11	5.4e-05	0.0093	17.8	0.3	3	23	314	334	313	334	0.98
7	11	0.21	36	6.5	3.8	1	23	340	363	340	363	0.90
8	11	0.0038	0.65	12.0	2.0	1	23	370	392	370	392	0.97
9	11	5.1e-05	0.0088	17.8	0.7	1	23	398	420	398	420	0.98
10	11	0.00058	0.1	14.5	1.4	1	22	426	447	426	449	0.91
11	11	0.00022	0.038	15.8	10.9	3	23	465	485	463	485	0.95

Sequence Information

Coding Sequence: ATGATAATTGATGAAGACTTCATAGGAGCGGATCTGATCTACAGTTGGAACAGCGTCGGACTGAACAACAGGGAAAGTGAGCGAAAAATTGCTCTACAAGAGGTGATTTCCCCACAGAAGATAATAGAAGATTCTTCAGATTCCTCACGTCTGTACACGGTGAAACAGAATCATTATACTGATCCATCATCTGAAGCATTTTTGAGAAGTCCCGCAACTCTCACGAAGGCGCTAAGAGAAGTGAAGATTTGTCGGAAAAGGAAAGATAGCGAAATTAAAAACACCGAGGTGACCGCTTTCCAACAGGatggaaatataaatatttgctGTCTGACATCTACAGGCCATGAAGCAAgaaatgaaaatgaaattttaaaagaaaaagatGCTTTTCTGAAGACAATTACACAAATAAGTGACACTCAAACTAAGGAGTTAACAAAACCCGAAATATTTCAATGTTCTGATTGTCCAAAAAAATTCCGTCATAGGTCACATCTTGTTACACATTCAAGAGCCCATGTTGACGATCGCAACTATGAGTGTGAAATTTGTGGAGCTCGATTCAAGACAAAatccaatttgaaatttcattttgaaactCATTCAGGAGCTCCGTTCTGTTGCACAATATGTAACAAAGTATTTTCAGAAAAGAAGATACTCAATCGTCATATTAGAGTTGTACATAGgtatacagagaaatttcaatgtgatcaaTGTGACCGGTGTTTCAAATCTCGAGCCAATCTGTCGGCTCATTACTCACTTCATACTGGAACCAAGCCTTATCCATGTTCAAAGTGTTCCAAAGCTTTTGTATACAAGAGTACATATGTTGCGCATCTCAAGACACACGACCAGCAACTCACTTTCAAATGTAGTGAGTGTGAGGATATGAAGTCGTGTCAACACCACAGTGAAGCCCGGCCTTGGTTATGTACAGTCTGTGGTAAGGGATACCCACTGAAAGGGACACTCAATAACCACATGAAGAGTCATCAACCACAGAAACCTCACAaATGTAGTGAATGTGTTAAGAGTTTCATGAAACGACAGTCCCTGGAGTGCCATGTGAAGGCAGAACATCGTGGCGAGAGACCTGACTTTATGTGCGATCAATGTTCCCAGTCCTATTTCAATGTTTTTGCACTAAAGCGCCATTACTTGAAACACATCTCAGAGAGATCCTTCTCTTGTGAAAGTTGCGGTAAAAAGTTCTGGACAAAGGACGCTCTGCGGGTACATCTGAAGAGTCACATGGGAGTGCGGTGTTACCAGTGCGCAGACTGTGGTCGATCCTTCCTCCACAAGCACAGTCTCAGTTCCCATCTGGTCGCAGCTCACAGTGTGCAGGGTTCTGTCAACATCACCCCGGCTCCCAGTCATCTGTGTCACATCTGCAACAAGACCTTCATGCATAAGTACAATCTGCTCAGACATCAGAGGCATCACTTTGGACATCCACAGGTACACATAAAACAGGTTGGAAACACCACTCTTCATGTTCTGTGA
Protein Sequence: MIIDEDFIGADLIYSWNSVGLNNRESERKIALQEVISPQKIIEDSSDSSRLYTVKQNHYTDPSSEAFLRSPATLTKALREVKICRKRKDSEIKNTEVTAFQQDGNINICCLTSTGHEARNENEILKEKDAFLKTITQISDTQTKELTKPEIFQCSDCPKKFRHRSHLVTHSRAHVDDRNYECEICGARFKTKSNLKFHFETHSGAPFCCTICNKVFSEKKILNRHIRVVHRYTEKFQCDQCDRCFKSRANLSAHYSLHTGTKPYPCSKCSKAFVYKSTYVAHLKTHDQQLTFKCSECEDMKSCQHHSEARPWLCTVCGKGYPLKGTLNNHMKSHQPQKPHKCSECVKSFMKRQSLECHVKAEHRGERPDFMCDQCSQSYFNVFALKRHYLKHISERSFSCESCGKKFWTKDALRVHLKSHMGVRCYQCADCGRSFLHKHSLSSHLVAAHSVQGSVNITPAPSHLCHICNKTFMHKYNLLRHQRHHFGHPQVHIKQVGNTTLHVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -