Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759215.1:50956867-50970236[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.2e-05 0.0072 18.1 0.2 2 23 336 358 335 358 0.96

2 9 0.014 2.4 10.2 2.8 1 23 372 394 372 394 0.99

3 9 1.5e-05 0.0026 19.5 0.4 1 23 465 488 465 488 0.97

4 9 0.0012 0.2 13.6 3.1 3 21 583 601 581 602 0.93

5 9 1.2e-05 0.002 19.9 0.3 1 23 609 631 609 631 0.98

6 9 2.2e-06 0.00038 22.1 0.2 1 23 637 660 637 660 0.96

7 9 3.9e-07 6.8e-05 24.5 0.7 1 23 666 688 666 688 0.99

8 9 1.4e-05 0.0024 19.6 2.0 1 23 694 716 694 716 0.98

9 9 1.2e-05 0.0021 19.8 3.0 1 23 722 744 722 744 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.2e-05	0.0072	18.1	0.2	2	23	336	358	335	358	0.96
2	9	0.014	2.4	10.2	2.8	1	23	372	394	372	394	0.99
3	9	1.5e-05	0.0026	19.5	0.4	1	23	465	488	465	488	0.97
4	9	0.0012	0.2	13.6	3.1	3	21	583	601	581	602	0.93
5	9	1.2e-05	0.002	19.9	0.3	1	23	609	631	609	631	0.98
6	9	2.2e-06	0.00038	22.1	0.2	1	23	637	660	637	660	0.96
7	9	3.9e-07	6.8e-05	24.5	0.7	1	23	666	688	666	688	0.99
8	9	1.4e-05	0.0024	19.6	2.0	1	23	694	716	694	716	0.98
9	9	1.2e-05	0.0021	19.8	3.0	1	23	722	744	722	744	0.98

Sequence Information

Coding Sequence: atGGATGCTTCAATTGTTGAGAGGCATAATGAATTACTTAACAGTATAGAGGTTGATTCAAGACTTAATGGCACAAAACTTGGTGGCAATACTGTCGTTTCCACCGACTCTGATACTCAAGAACTAATTAATTCACAATATATGACCATCCACCGACTGCCAGAAAATCTTCAAAAAGTGCAGCTTGTTGGAGATGCACTTTCAACTGAACTGTTGAATCATCAGGTTGTGGAGTTGACCCAAGGGAATGAATTTGTTCCGGGTACAGTTGGCAATCAATATTATGACGACGATCTTCTGCCACATGATCTTACTGAAGAAGATAAACGTCTTGCTGCAGCCTTAGTGGCTGTTCAGCTGGTCCAACAACAGAAGCAGCAACACTCCCTGCTCACATCGGAACTGCTTAGTGCCAAGAGCATGTCGCCTCTGTCCCCCCTCACCATGGACAAGCCTGGGGGGATGGCAGCTATGGTCACCGGCTATATCCAGGCCTTTGATGATGATCCCACCACTCAACAGCATCTCATAGACACACAGAATCATGATCGCATCCTCAAGTTGTATCAAACTCAAACATCCCCCCATTTGCCGGAGCTGCGACTGCCTCCGTTGCCACCTCTCAAGAAGGTACTCTCCAGCCAGACGATGATCCGCAACAGATTCAACGATCGGATTCTAACTGATACAGCAGTCTCAGATGCTCATCGGATTCTGCCTTCTCCTCAGCCCCCAGTTACGTTGGAACAAGAGGTTCAAGTGAAGAACAACTATGTGAACATAAACAAGATGACAAAGCATGATGTTGGTATGATTGGAGGGGAGGATCCACAGACACATGGCGAGGTGGAGGTGGTAGGAGGGCTGGAGCTGGAGGAGGGGGACTCAGACCTGGACCCTGAGGGGGACCTCAAGTCGGCCAGCAAGTCGCTACCTCACAAGAAGAGGATACCCAGGAAGCTGAAGACACAGCCAACTTCTAGGAGTCCACACTCCAAAGGCCTGAAGTGCTCGAAATGTGGTGAGACTTTTGCATCGCAGTCAGTTCTGTGGGCACACAATCGTTCGGTGCATGGTGGGGTTGGTGCTGGAAGTTCCTCAAAACGTCCTGCCTACTCGTGTGAGATATGCAGCACTATCTGTCAAAATCAAGCCAAATTTTTTGAACATCTAAAGACACATTATGAACCACAACGAAATGCCGAGGCTCCGGGCGTCCCCAGCGTTCTTACAGATGTAAATATTAGTccaGTTGAAGGAGTGATGAGTTCATCGAACAGCAAGCCGGTATTAGGTGTGACAGTGGAAGAGGTTGATGTTCCCTCGGGAGAAGCGGGAGTGGATAATGGGGTTGGGGTAGGGGTGGGTGTTGTGGTAGTGGGTGGCTCCAGCTTCCCATGCACTCTCTGTGGTCGTCTGTTCAAACGGCAGAAGGCCTTAGAGACCCACCTCAATTCGGCCCATCCAGCCCCGACCCAGATCGAGGAGTTCTCAGAGCCAGAGGACATGATGGAGGGGATACGGCATGTAGTCAACATCCAGGCTGGCGCTGGCGACACCGACCCTCCTCGCACTGACACCAAGAGCTGGAAATATTGTGATGAATTCACCTCGGATGTGGTCTGTTCCTCGGGACATGACTTGGAAGACACCAAAACTGATAATGAACCCAAGACTGAGGTTGATGATGGCATGGGAGACTTTCCTGACGATGACAAAGgtaaaaagaagaagaagctGGTCCACTGTCCGCATTGCACCCGGACCTTCACACATCGAAACTCCTTACTGTACCACGTGAGATCCTACTCCGGGAGACGGCTCCATCAGTGTGACGTTTGTGGTAAAGGATTCTTCGCAGCTAATGCTCTTAggGTTCATATGAGGATGCACTCCGGGGACAAGCCATATAAATGTGAGGTTTGCGGACGTAACTTTCGGCAATGGGGCGACCTCAAATATCATGTTATCTCTTTGCATTCCAACACGAGGCAGTATCAGTGTGAGTTCTGTGGGAAGGACTTTGCTCGCAAGTATTCACTCATTGTTCACAGgAGGATTCATACTGGTgagaaaaattatgtttgtgaGTTCTGCCGAAAAACGTTTCGTGCTTCCTCTTATCTCAATAACCACCGTCGTATACACACAGGTGAAAAGCCGTACACTTGCGACTTATGTCACAAGCCATTCCGAGTGAAGTCAGACATGAAGAGGCATCGTAACATCCACAACAAGGTGGTGAACAACAGTTCGACGGGCGGAGGTTCTGCCCGGGCTAACGAGGGGGATGGTAGCGGGGGTGGGAGTGGTGGCGGGGAGGCTTCCAAACCTGTCGTGGTGGACACTGGCACAGCAGGGAGCGCTACTCTTGAGCTGACCAGTCGAGCTGAGGACGAATTCAGGGCTCCCCCGACCTCCGACCCCAGCACACTCTATGTGTGGCTCCCCGTGACCACCGAGGAGACCATTCCGGAGTCCATACTACCCGACTAG
Protein Sequence: MDASIVERHNELLNSIEVDSRLNGTKLGGNTVVSTDSDTQELINSQYMTIHRLPENLQKVQLVGDALSTELLNHQVVELTQGNEFVPGTVGNQYYDDDLLPHDLTEEDKRLAAALVAVQLVQQQKQQHSLLTSELLSAKSMSPLSPLTMDKPGGMAAMVTGYIQAFDDDPTTQQHLIDTQNHDRILKLYQTQTSPHLPELRLPPLPPLKKVLSSQTMIRNRFNDRILTDTAVSDAHRILPSPQPPVTLEQEVQVKNNYVNINKMTKHDVGMIGGEDPQTHGEVEVVGGLELEEGDSDLDPEGDLKSASKSLPHKKRIPRKLKTQPTSRSPHSKGLKCSKCGETFASQSVLWAHNRSVHGGVGAGSSSKRPAYSCEICSTICQNQAKFFEHLKTHYEPQRNAEAPGVPSVLTDVNISPVEGVMSSSNSKPVLGVTVEEVDVPSGEAGVDNGVGVGVGVVVVGGSSFPCTLCGRLFKRQKALETHLNSAHPAPTQIEEFSEPEDMMEGIRHVVNIQAGAGDTDPPRTDTKSWKYCDEFTSDVVCSSGHDLEDTKTDNEPKTEVDDGMGDFPDDDKGKKKKKLVHCPHCTRTFTHRNSLLYHVRSYSGRRLHQCDVCGKGFFAANALRVHMRMHSGDKPYKCEVCGRNFRQWGDLKYHVISLHSNTRQYQCEFCGKDFARKYSLIVHRRIHTGEKNYVCEFCRKTFRASSYLNNHRRIHTGEKPYTCDLCHKPFRVKSDMKRHRNIHNKVVNNSSTGGGSARANEGDGSGGGSGGGEASKPVVVDTGTAGSATLELTSRAEDEFRAPPTSDPSTLYVWLPVTTEETIPESILPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -