Basic Information

Insect: Aradus depressus
Gene Symbol: salm
Assembly: GCA_963662175.1
Location: OY759217.1:22732962-22747390[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.9 1.5e+03 1.3 0.0 2 20 44 62 43 64 0.82

2 10 4.6e-06 0.0008 21.1 0.9 1 23 310 332 310 332 0.98

3 10 9.1e-06 0.0016 20.2 2.1 1 23 338 360 338 360 0.98

4 10 0.54 94 5.2 1.8 3 23 646 666 645 666 0.92

5 10 5.6e-08 9.7e-06 27.2 0.6 1 23 672 694 672 694 0.97

6 10 0.00063 0.11 14.4 2.7 1 23 704 726 704 726 0.98

7 10 0.0084 1.5 10.9 2.4 2 23 936 957 935 957 0.97

8 10 2.3e-07 4e-05 25.2 1.4 1 23 963 985 963 985 0.99

9 10 1.3e-06 0.00022 22.9 4.0 3 23 1136 1156 1134 1156 0.96

10 10 1.5e-07 2.6e-05 25.8 2.2 1 23 1162 1184 1162 1184 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.9	1.5e+03	1.3	0.0	2	20	44	62	43	64	0.82
2	10	4.6e-06	0.0008	21.1	0.9	1	23	310	332	310	332	0.98
3	10	9.1e-06	0.0016	20.2	2.1	1	23	338	360	338	360	0.98
4	10	0.54	94	5.2	1.8	3	23	646	666	645	666	0.92
5	10	5.6e-08	9.7e-06	27.2	0.6	1	23	672	694	672	694	0.97
6	10	0.00063	0.11	14.4	2.7	1	23	704	726	704	726	0.98
7	10	0.0084	1.5	10.9	2.4	2	23	936	957	935	957	0.97
8	10	2.3e-07	4e-05	25.2	1.4	1	23	963	985	963	985	0.99
9	10	1.3e-06	0.00022	22.9	4.0	3	23	1136	1156	1134	1156	0.96
10	10	1.5e-07	2.6e-05	25.8	2.2	1	23	1162	1184	1162	1184	0.98

Sequence Information

Coding Sequence: ATGTCCCCTTGCCTATTAGGGACGGAGGCCCCACTCTTTGGAACATTCTTCAAGATGAAGGATAGCCCTCAAGGTGAGAGCTGGTCCGGGTCGGAGGACGAGGCGGCCCCCATGGAGCAAGAGCCAGTGTCCTGCCCCCAATGCGGGATAGACCTCCCCAATTACATGGATCTGGGGGAGCATGCCAAGCTGTGTCCgggagtggaggaggcgaagGTGGAGGAAGAGGCGAGGAGGCAGGACGCAGAGAACAACAACAGTCTGGAGGAGTCTGATGAGCCCCCGGCCATGTTCCCTTACAGCAGCCCCAGTCATGTCACCCTGGAGGCTCTCCAGAACACCAAAGTGGCTGTGGCACAATTCGCAGCCACGGCCATGGCCAACAACGCAGACAACCCAGCTGCGCTCCAGGAGCTGGCCGTCCTCCAGTCCACCCTTTACACCCTCCAGCATCAGCAGATGATGCAACTTAACCTGATCCAGCAATTACAACAGCAGCTGCAGATCGGAAGGCCCAAGGACCTGAGCCCGCCCCCGCAGCAGCAACCGCTGTTGCCCCAGCCCAAGGAGAGCCGAAGTCCAACCCCGGTGAAGCCAGACAGAGACAGTCCTCCTATCGCCGCCCCCACACCGCCAGCTCCCGCTCCGCCCCCACTGCCCTCACCTCCAGCCTCTCTCCCTCCATGTTCAATATCCTCCTCATTTGCATCTTCCATCATCACCAACCTTGACCCACCACCATCGCCCAGTGAGCCCAACACCCTAGAGATGCTCCAGAGGCGAGCGCAAGAAGTCTTGGACAATGCAAGTCAAGGACTTTTAGCCAACAATCTGGCGGATGAGCTGGCCTTCAGAAAGAATGGGAGTAAAGGCAGCATGTCTCCATACGACTCCAAAACAGGTGGGCGGAATGAACCATTTTTCAAACATAGATGCAGATATTGCGGAAAAGTTTTTGGTAGCGATTCAGCTCTTCAAATTCACATAAGATCTCACACCGGGGAGCGGCCCTTTAAGTGCAATGTGTGCGGAAGCAGGTTTACGACGAAGGGTAACCTCAAAGTTCATTTCCAGCGTCATTCGGCCAAGTTTCCTCACATCAAAATGAATCCAAATCCAATCCCGGAGCATCTTGACAAGTATCATCCACCACTGCTGGCGCAAATGGGAGCTCACCAAAGCCTACCCCCTGGGCCGCCTCCTTTCCCACCCCAGTTCAATCCTCTCTACCGCCCGCCCCATGACCTAGTCCTCCCCCCTCAATCGAGGACACACGAACCTGTAAGCAAGTCTCTCCTACCTGTGAGCATGTTCGGACCTCGAATCGAACAAGATGTTCCTGAAAATCTTAGTAGTAAAGCACAATCTGAGGATTGTGGTTCTGGGGAGGATATGTACAAAAAGGAGCCAACGGATGACGAAATCGAATCAGGGCGTTTGAGTCCCAAGCGGGAGTTAGAGGCCGATACCGAAATGGAAAGGTATCCTTCACCATCAGGCTATGACGACGGCAGCCTGGACAGCAAATACACCGGAGATGACATCCCAGGAGACAGAGATAGCCCAGGACTGGAAAAGAACGAAGACAGTTTCCAGGACCAACCGGAGAACCTCTCAAATAAAAGTACGTCTGACTTTTGTCATTTATCTTTAACCCCAGATCACAGGTTTCAACCGTCCTTAAGTTTTCCTAATATAGCTTCACCTCCTAGTAGTACTTCATCAGGTAGTGTCCATAGATTAACACCGAGGGGGTTCCTTCCCAATGAGCCCGATCCTATCAAAGACCCAGCCATATATTCCAGTCTCCTTCCCCGGCCCGGCAGCACCGACAACTCTTGGGAGAGTCTTATTGAGATCACTAAAACGTCAGAGACCCACAAGCTCCAGCAGCTGGTGgataatatagaaaataaactgACTGATCCTAACCAGTGTATCATCTGTCAAAGAGTGTTGTCCTGTAAGAGCGCCCTTCAGATGCACTACAGGACGCACACCGGTGAGCGACCCTTCAGGTGCAAGATTTGTGGCAGGGCGTTCACAACCAAGGGCAACCTCAAGACCCATATGGGCGTGCATAGAATAAAGCCGCCGATGAGGATGCTCCACCAGTGTCCGGTCTGCCACAAGAAGTTCACTAATGGGCTCGTCCTCCAGCAACATATCCGTCTTCACACTGGGGAGCCCACGGATCTCACCCCAGAGCAAATCCAAGCAGCCGAGATCAAAGACTTCACTCCCCAGTCCTCCCCCTCTTTCGTTCCTTTCCCACTTCACAGCCGGCCCCCTTCCCCATTCCTCAGTCCTAACAAAGATGAGAAGCAGGAGGACTATCTGGATGAGATGCGGGCCAGCTCCCTGAGCCCCATTTCTGATGCTGCCTTCTCCACCTCCATAACTGCCCTTGAGAACCAAGTCCGAACCATAACCACCATTGCCACCCACTACCTCCCCTCGAAGTTAGCTAACGACATTGAGGATGGACCATGTAATATTGACTATAACCCTATTCCAGTGAACGGAGACAAATCGCCTGGTGGGAGTCCGTCAGACTCCGAGACGCCGAGCCTCCAGCTGACCCAGTCTCCGGCCGCCTCCGAGTGCTCCTCTCTAGGGGCCCTCGATCTGACTGGGTCTCGCTCCTCCTCCATATTTCCTGGATTCTTCCCGCCCCCTGCCAGCGGACCGCCACCTCCAGCCTCCTTCACCTCAGCACTGTCCTCGCTGACATCTTCAGTGCTCACAACCACTGCCTTCAACCCCTTGGGCCTTGCTGTTGGACCTCCAGTTCGAGGAAATACGACCTGCAACCTCTGCTTCAAGACGTTCGCCTGTAACTCCGCCTTGGAGATCCACTACCGAAGCCACACCAAGGAGCGACCGTTTAAGTGCACCATCTGTGACAGGGGCTTCTCAACTAAGgGTAACATGAAGCAGCATATGCTGACTCACAAGATTCGAGATATGCCGCCTCATCTATTCGAGCAGAAAGGTGGCCCCGGGAGTGTAAGCAGCATGATTGGCAGTGGGGAGGAGACCTCAAGTGACCAACAACTTCAACATTCACCGGTACAACTGCAGTCTTCGCCTGCACAACTGCAGCCGCCGCATTCCCAGTCGGGGCCACAACCCCAGCACCAGCAGCTGCAAGGACCGCCTCCGCAGTCTCAACAACTGCAGGCCTCTCAGCCATCCCCTCAGCAGCAGGCCCCACCCCCTCCACCGCCACAACTGCAGCCATCCCCACACCTGCAGCCACAACCGCAGTCCACGCCGCTGCCGCGGACCCTGAGTCCGGCCCCCCCGTCCAAACCGGAGATAGGGGTCAAGAGGTCACCTCCTCAGAGCGATACGAACTCAATGCCTCTTCCCAAACGGCAACCCAGCTTGCCAAAACACTTGTGTCATGTTTGCAATAAGAACTTCTCATCCTCATCTGCTCTTCAGATACACATGCGGACCCACACGGGGGACAAGCCCTTCCGATGTTCCATCTGTCACAAGGCATTCACCACAAAGGGAAACCTCAAGgtGCATATGGGTACGCACATGTGGACGAACGGTGCGTCGCGTCGAGGAAGACGGATGTCTCTAGAGCTACCCCAACTGCCCAAGGAttcagagttcctccacagaagGCCCGACCTCTTCTATCCCTACCTACCAGCCCCTTTCCTTAACGGCATCCAtcacaagCTGTCGGAGATGCCGATGGGACAGGGAGGCGGAGGCGGGGGCGGTGGCAGCCACAACGGACTGCTCCCCTTCGGTGGATTCCCCGGGGCCGACATGAAGGCAGAGCCCCGAAGTCCTCCAGAGAAGCCCCCTCCTCCTCACTCCACCCCACCCTCCCTCTGGGAGCTCCACTTCGAGAGGAAGGCGGAGGAGCAAGCGATGCCGCCCCCACGAGGTGAGGGACTGGCTGCATGA
Protein Sequence: MSPCLLGTEAPLFGTFFKMKDSPQGESWSGSEDEAAPMEQEPVSCPQCGIDLPNYMDLGEHAKLCPGVEEAKVEEEARRQDAENNNSLEESDEPPAMFPYSSPSHVTLEALQNTKVAVAQFAATAMANNADNPAALQELAVLQSTLYTLQHQQMMQLNLIQQLQQQLQIGRPKDLSPPPQQQPLLPQPKESRSPTPVKPDRDSPPIAAPTPPAPAPPPLPSPPASLPPCSISSSFASSIITNLDPPPSPSEPNTLEMLQRRAQEVLDNASQGLLANNLADELAFRKNGSKGSMSPYDSKTGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPIPEHLDKYHPPLLAQMGAHQSLPPGPPPFPPQFNPLYRPPHDLVLPPQSRTHEPVSKSLLPVSMFGPRIEQDVPENLSSKAQSEDCGSGEDMYKKEPTDDEIESGRLSPKRELEADTEMERYPSPSGYDDGSLDSKYTGDDIPGDRDSPGLEKNEDSFQDQPENLSNKSTSDFCHLSLTPDHRFQPSLSFPNIASPPSSTSSGSVHRLTPRGFLPNEPDPIKDPAIYSSLLPRPGSTDNSWESLIEITKTSETHKLQQLVDNIENKLTDPNQCIICQRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRIKPPMRMLHQCPVCHKKFTNGLVLQQHIRLHTGEPTDLTPEQIQAAEIKDFTPQSSPSFVPFPLHSRPPSPFLSPNKDEKQEDYLDEMRASSLSPISDAAFSTSITALENQVRTITTIATHYLPSKLANDIEDGPCNIDYNPIPVNGDKSPGGSPSDSETPSLQLTQSPAASECSSLGALDLTGSRSSSIFPGFFPPPASGPPPPASFTSALSSLTSSVLTTTAFNPLGLAVGPPVRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPPHLFEQKGGPGSVSSMIGSGEETSSDQQLQHSPVQLQSSPAQLQPPHSQSGPQPQHQQLQGPPPQSQQLQASQPSPQQQAPPPPPPQLQPSPHLQPQPQSTPLPRTLSPAPPSKPEIGVKRSPPQSDTNSMPLPKRQPSLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCSICHKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLELPQLPKDSEFLHRRPDLFYPYLPAPFLNGIHHKLSEMPMGQGGGGGGGGSHNGLLPFGGFPGADMKAEPRSPPEKPPPPHSTPPSLWELHFERKAEEQAMPPPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -