Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759221.1:8265881-8273514[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0002 0.034 16.0 4.5 1 23 155 177 155 177 0.98

2 10 0.00013 0.023 16.5 4.0 1 23 183 205 183 205 0.96

3 10 2.3e-05 0.0041 18.9 6.0 1 23 211 233 211 233 0.99

4 10 1.6e-05 0.0027 19.5 4.4 1 23 239 261 239 261 0.97

5 10 2.7e-05 0.0047 18.7 1.6 1 23 267 289 267 289 0.96

6 10 0.0014 0.24 13.3 0.1 1 23 295 317 295 317 0.97

7 10 0.0029 0.5 12.3 0.2 2 22 323 343 322 343 0.95

8 10 4.5e-06 0.00079 21.1 0.1 3 23 368 388 367 388 0.98

9 10 2.1e-06 0.00036 22.2 0.4 1 21 421 441 421 442 0.93

10 10 7.5e-06 0.0013 20.5 6.0 1 23 453 475 453 475 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0002	0.034	16.0	4.5	1	23	155	177	155	177	0.98
2	10	0.00013	0.023	16.5	4.0	1	23	183	205	183	205	0.96
3	10	2.3e-05	0.0041	18.9	6.0	1	23	211	233	211	233	0.99
4	10	1.6e-05	0.0027	19.5	4.4	1	23	239	261	239	261	0.97
5	10	2.7e-05	0.0047	18.7	1.6	1	23	267	289	267	289	0.96
6	10	0.0014	0.24	13.3	0.1	1	23	295	317	295	317	0.97
7	10	0.0029	0.5	12.3	0.2	2	22	323	343	322	343	0.95
8	10	4.5e-06	0.00079	21.1	0.1	3	23	368	388	367	388	0.98
9	10	2.1e-06	0.00036	22.2	0.4	1	21	421	441	421	442	0.93
10	10	7.5e-06	0.0013	20.5	6.0	1	23	453	475	453	475	0.98

Sequence Information

Coding Sequence: ATGGAAAGCACTTTAGCATATGCTGTAAGatgTAAAACGGAACGGATTTTGGATCCGATAAAAGTTGTTTCTGATCATCTTTCCGAGAGAATCATTTTAGAATCAAATGAAGAATCTATGCCCTATTACAATTCTGTGTTTAAGCCAGCGGTTCAAAACAATTCTTTTATAAAAGGGCAAAAAGTTAAGAGCGACTCGGATTCCTGTGTTAAATTTAATGATCCAAATAATATGAACAACAATTTGATGTTCCGAAGTATGTTTTTTATGAATGATGAGCCACGACATTTCTTAGCTCCTCATATCCCTCCATTGGCAAATGATGGTGAGTATTTTCAAAGGAAAACATTACCAGTTGGAAGTAGCAGTAATGCAAGTCAACAGAATGTTGTTTCGTCGCAAACACAAACCGGGGAACCGATGCCACAACAGAAACAACCGAATCCGTACAAACAACGTCCTCACACCTGCGAAGAGTGCGGGAAATCGTTTCTTTTGAAGCATCACCTTGCTACACACATTCGTGTTCACACCGGAGAAAGGCCTCATGTGTGTCCTGAGTGTGGAAAGACATTTGCACTTAAACATTGTCTCAGTACACATCTCCTCCTCCACAGTGCCGAGAGACCATACAAATGTAACGAATGTAACAAATCTTTTACTCTGAAACATCACTTAGTGAGCCATGAAAAGATGCATACTAGGGACAGGCCGTTTGAGTGTCGCGAATGTGGACAGACCTTTTCCCAAAAACGCCACCTGAGCACCCATCTGAAATTCCACTCCGGAGAGAGACCATTTTCCTGTCAGGTTTGCGGAGAGTCATTCACCCGAGAGGAGCACCTAGTGATGCACTCGCGGTTCCATGGAGGTCTCCAACCGTACATCTGTCCAGACTGTGGAGCGGGGTTCCTTCGCAAGTTCCAGCTGGTGGAGCACGAACGGCAGCATGGTCGGGTCCCAGACACCTGCCCCACCTGCGGCAAGGAGTTCCTCCAGAAGAGGACCCTCCTCCTTCATGTGCGCACTTGTGGCCTCACCTCCAACCCCCATCTTCATCATGACACCACctccactctccctcccctaCCTGCCAAACTCTGCAAAGAGTGTGGAGAGTCGTTCAGCAGTGCGGAGGGTCTAGCGCTGCACATGCGACTCCATGTCGGGGATCACAGTTTCCTGTCGGATATCTGCAGTCTGGCGGCCTCCTTGAAGCAGGCGGCTGGAGTGGGAGGCCACAATGTGATCAAGAAGTGCCACGCCTGCCCGGAGTGCGGGAAGCCCTTCACACAAAAACATGGTCTCAACCAGCACATCCTCAGGTATCCAAATGGTGCTTGCAAATTGAAGCCGTTCCGATGTGAAAAATGCGGCAAATGCTTCTCACAAAAGAATCACCTCGTACTCCATGAAAGGCAACACATGGACCCATCAGCCCGAACTGGGGCAGCTATGAAACATCAGCAGTCTCAGCAACAGGCTCAGCAGCAGGCCCAGCAACAGcaacagcagcagcagcaacaaCGACCCGAGCAGCAGGTGAACCTGATGGCTCACTTGGAGCTACAACAACACCCACTGGCCCAGCTGAGACACCCTGAGGCACATGTCCCGTCAACAGCCTGA
Protein Sequence: MESTLAYAVRCKTERILDPIKVVSDHLSERIILESNEESMPYYNSVFKPAVQNNSFIKGQKVKSDSDSCVKFNDPNNMNNNLMFRSMFFMNDEPRHFLAPHIPPLANDGEYFQRKTLPVGSSSNASQQNVVSSQTQTGEPMPQQKQPNPYKQRPHTCEECGKSFLLKHHLATHIRVHTGERPHVCPECGKTFALKHCLSTHLLLHSAERPYKCNECNKSFTLKHHLVSHEKMHTRDRPFECRECGQTFSQKRHLSTHLKFHSGERPFSCQVCGESFTREEHLVMHSRFHGGLQPYICPDCGAGFLRKFQLVEHERQHGRVPDTCPTCGKEFLQKRTLLLHVRTCGLTSNPHLHHDTTSTLPPLPAKLCKECGESFSSAEGLALHMRLHVGDHSFLSDICSLAASLKQAAGVGGHNVIKKCHACPECGKPFTQKHGLNQHILRYPNGACKLKPFRCEKCGKCFSQKNHLVLHERQHMDPSARTGAAMKHQQSQQQAQQQAQQQQQQQQQQRPEQQVNLMAHLELQQHPLAQLRHPEAHVPSTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -