Adep009344.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759215.1:21598222-21603265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 3e+02 3.6 0.1 2 23 7 28 6 28 0.94 2 15 1.4 2.4e+02 3.9 0.7 1 23 315 338 315 338 0.91 3 15 0.013 2.2 10.3 0.0 3 23 355 376 353 376 0.95 4 15 0.025 4.3 9.4 1.2 2 23 382 404 382 404 0.93 5 15 1.2e-05 0.0022 19.8 1.3 2 23 407 428 406 428 0.96 6 15 3.1e-06 0.00053 21.7 0.9 1 23 434 456 434 456 0.98 7 15 5.7e-07 9.9e-05 24.0 2.9 1 23 462 485 462 485 0.95 8 15 0.002 0.34 12.9 0.3 5 23 498 516 497 516 0.97 9 15 0.00025 0.044 15.6 3.6 2 23 522 544 521 544 0.97 10 15 0.0028 0.49 12.4 0.2 2 23 558 578 558 578 0.97 11 15 0.39 68 5.6 0.4 5 20 590 605 588 608 0.88 12 15 4.2e-07 7.3e-05 24.4 3.0 1 23 616 638 616 638 0.99 13 15 0.00054 0.094 14.6 5.1 1 23 644 666 644 666 0.97 14 15 1.8e-05 0.0032 19.2 1.6 1 23 672 694 672 694 0.98 15 15 0.0011 0.18 13.7 9.4 1 23 700 722 700 723 0.96
Sequence Information
- Coding Sequence
- ATGGAACAACCAGTCTTACCATGCCCTGTGTGCACTCTCTTTCTGAGGGAGGGCATGTCAATGGAAAGTCATTTGAACACTCACCCCAAGGATCAGGTGATCGAGGCATTAGTTCGCCTTTACTCTGGAAATAGAGTTGAAAATACGAACCAATATGGACACCAAACCATTGTTAATCCATTCCAATTGGTTTCCGAGGAACACATATTTCTTGGTCGACAGCAAGTTACCACTAACATTTTACATACTCCATTTATGGGCATTCCTGTTTATCCTAATCCTCCCATTGTGGGCTCAACGCCGGATTTCAATAACCATTCAGCATCAATTCCTTTTGATGTATCATCATCGCAAGAGTCACCTGCCATGGTCACTTTGGTTAATTATTCACAAGAAGACGAGTATCCGGGAGATGCGGGAGAAGATGATGTAAATGAAGAGGTGGAACAGGTGATCATCTTGAATGATGAGCGTACCAAAGAGAGGTCTCCCATTGATGATGATATGTCGAACCTCGGAGACGCACATTCACCAAGGTCTGATTCAAGGCTCTCTCATCACTCGGACCTCTCCAAGCACTCTATCCACTCTGTACATTCATTGGAACTAAATGAAAACGCCTGCCAGGACTATGCTTCAGATTCATCACTCCATCCTTGCCAAGAGGAAGAGGTGGATGATCCAGGTGAACCTGGGATGGACTACACTGACAATGaATACTGTTCGAAAGAGTTGACCCGTTCGCAGTTGATGGAGGAAGCACATGACATTGAATTGAGCAGTTCTGGTTTGAATATTCAAGCTAACGAAAAGATGCCGCCACATGGAGAACTCTCAGGTCAGGGCAGTCTCGGCAACTCTGTCAACTCCGTCTGGCTGCTTGAGgGGCCTATGATGTCTGATCCAGTATGGGTGAACCGAAGAGAAGACGAAAAGAAGAAATATCCTTGTTTGTATTGTTCGGAGGAATTCAACTGTCCGAAGGAACGTCGGGTTCATGTGGCAACCCTCCACTGTGCTACCGAGGCCAAACCAGTAGGCCCTGAAACAAAGGAGTCTATGTGTCTCAAGTGTGGGCTGCAGCTGGCCTCAGCGGCAGACCTGAGGGTGCACGTCCGATCCGTCCACAAGAACATTCAGAGGAAGTGCAGCGTCTGTTCGGAGGAGTTCCCCACCCAGACACTCTTCCTCAGCCACCTCACCCATGTCCACCCCCTCGAGTGTCGCACCTGCGGCAAGACCTTCAACAACAAGTATGCCCTCTACACACACACCAAGATACACATGACTGTTAAACCCTACTCCTGTACTCTTTGCCCGAAGACGTTTGTTACTAATCAGAAGTTGAAGGAACACATGAATGGACACACGGGAGCCTGTCCCTATCAGTGCAACATGTGCGATAAGAAATTTAGAAGATATTCTAATTTAAAACAGCATAGGGATATTCagcatttaaagaaaaaaaaaataaccaaagAATTTTTCTGTGATTGTGGTGAATCTTTTCctacaaaaaagaaattagCGTGGCATAAAGAAACTCACGACACCAAACCTAAGCAGTGTATGTACTGCACTGAAAGATACGTTCATCTGTCCAGTCTGACGAGACACATCCGTAAAAAACACGACAGTCATTATTTACCAAAAATAGGGAAGAAAAATGCCGTATGTCCAATTTGTAATATGGTGTTTATGGATACCTCATTGAAGGTTCACCTGAGAACCCATGGCCACGGAGTTCATAAACAATTTGGGTGTATTGTGTGCGGAAAGCGGTTCCTAACCAAGTGGAATCTTAGTGTGCACCGATGGACACACGCTTCACGTATGTCCAAGCCGTACAAGTGCACTATGTGCAAGAGAGCTTTCATCCGACACTCGGAGCTGCAGGTGCACATGCGGTCTCATCTCGGGAGCAAGCCCTACGTGTGCAACTTCTGTGGTTGTCAGTTCGTCCGAAAGCACAACTGGCAGCGACATGAGAAGGAGCACACGGCCGACAAACGGTTTACGTGTGGGGAGTGCGGGAAAGCCTTTCATCGCAGCTACTACCTCCTCGAGCACTCTCGCATACATACTGGGCTCAAGCCCTACACTTGTCATATCTGTAACAAGACTTCAACTACCAAGTCAAACCATAACAAACATGTTCGGACTCATCACGCTCGAGAAGCTGTCAATACCGAATCGTAA
- Protein Sequence
- MEQPVLPCPVCTLFLREGMSMESHLNTHPKDQVIEALVRLYSGNRVENTNQYGHQTIVNPFQLVSEEHIFLGRQQVTTNILHTPFMGIPVYPNPPIVGSTPDFNNHSASIPFDVSSSQESPAMVTLVNYSQEDEYPGDAGEDDVNEEVEQVIILNDERTKERSPIDDDMSNLGDAHSPRSDSRLSHHSDLSKHSIHSVHSLELNENACQDYASDSSLHPCQEEEVDDPGEPGMDYTDNEYCSKELTRSQLMEEAHDIELSSSGLNIQANEKMPPHGELSGQGSLGNSVNSVWLLEGPMMSDPVWVNRREDEKKKYPCLYCSEEFNCPKERRVHVATLHCATEAKPVGPETKESMCLKCGLQLASAADLRVHVRSVHKNIQRKCSVCSEEFPTQTLFLSHLTHVHPLECRTCGKTFNNKYALYTHTKIHMTVKPYSCTLCPKTFVTNQKLKEHMNGHTGACPYQCNMCDKKFRRYSNLKQHRDIQHLKKKKITKEFFCDCGESFPTKKKLAWHKETHDTKPKQCMYCTERYVHLSSLTRHIRKKHDSHYLPKIGKKNAVCPICNMVFMDTSLKVHLRTHGHGVHKQFGCIVCGKRFLTKWNLSVHRWTHASRMSKPYKCTMCKRAFIRHSELQVHMRSHLGSKPYVCNFCGCQFVRKHNWQRHEKEHTADKRFTCGECGKAFHRSYYLLEHSRIHTGLKPYTCHICNKTSTTKSNHNKHVRTHHAREAVNTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -