Adep043400.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- -
- Assembly
- GCA_963662175.1
- Location
- OY759226.1:13740537-13769965[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.7 1.5e+03 1.4 1.3 15 23 160 169 159 169 0.93 2 20 0.0011 0.2 13.6 0.9 1 23 175 198 175 198 0.97 3 20 0.056 9.7 8.3 2.7 1 23 204 227 204 227 0.92 4 20 5.4e-05 0.0094 17.8 1.0 1 23 233 256 233 256 0.97 5 20 0.0031 0.54 12.2 0.7 1 23 262 285 262 285 0.94 6 20 0.00069 0.12 14.3 0.6 2 23 292 314 291 314 0.95 7 20 0.0014 0.25 13.3 0.2 1 20 320 339 320 340 0.97 8 20 6.9 1.2e+03 1.7 0.1 10 23 341 355 339 355 0.88 9 20 0.002 0.35 12.8 0.8 1 23 361 384 361 384 0.93 10 20 0.00025 0.043 15.7 0.2 1 20 390 409 390 411 0.95 11 20 0.00011 0.02 16.7 0.5 1 23 573 596 573 596 0.93 12 20 5.3 9.1e+02 2.1 0.1 11 23 636 649 633 649 0.88 13 20 0.0024 0.41 12.6 1.7 1 23 655 678 655 678 0.97 14 20 0.0027 0.47 12.4 0.1 2 23 685 707 684 707 0.93 15 20 0.0011 0.19 13.7 0.6 2 23 714 736 713 736 0.95 16 20 7.9e-05 0.014 17.2 0.8 1 23 742 765 742 765 0.97 17 20 0.0032 0.56 12.2 1.4 1 23 771 794 771 794 0.97 18 20 0.0031 0.54 12.2 2.5 1 23 800 823 800 823 0.97 19 20 9.1e-05 0.016 17.1 0.7 1 23 829 852 829 852 0.97 20 20 0.0007 0.12 14.3 0.7 1 23 858 881 858 881 0.97
Sequence Information
- Coding Sequence
- ATGAAGACTGAATCACCAACTCTAAAATCTGATGAACTTATCATTGATGATTCTTCAGCGCCCTCATCCTCTCAAGTGAAGACTGAGACCTCGGAAATGGTCAAAAATGAAGTTCTCATTGATGAGGAGATTTGGTCGAACGCTATAGAAGAGTCTCAGGATGAAGACACGGTTCTCATCAAGAAAGGAAACTCTCAAGcTGTATATCCTCCTTTCGCTATATTTCTGGAAACTAAAAGTGAACTGGGAGATGTGATATTTGATGAAAATGgTGTTGATGATGTGGATCCTCTTGGTCTTGAAGATGATTCTGCAGAGAACAGTTCTTTATTAGCAGCATATAAAAGGGAGAGTTCTACTTCAGAGACTGCTAAAGGAAACAGTTCTGCGACAGAAGGAAAGATTTGTTCACAGAGGCCATTTTTGAGCAACGAGCAAAGCAGCAGTCTTCCAACAGAGATGCGTATGAATGGATTGCAACTGAAAAGACATATTAGAAGGAATCATACTGcagacaaacctttcaaatgttacTCCTGCGATTACAGTTCCGTGAGACTTTCTTCTCTGAAAATACATATTGCACGAAAGCATACTGGAcacaaacctttcaaatgttcctccTGCGACTACAGTACCGTGACATCTTTTGAAATGAGAAAACATTTTGTAAGGAaacatactggagacaaacctttcaaatgttcctccTGCGACTACAGTACCGCGACATCTTCTAATCTGAAATTGCATATTGCACGGAaacatactggagacaaacctttCGAATGTTCCTCCTGCGATTACAGCTGCGTGGCATCTTCTGATCTGAAATCACATATTGCATGGAAACATACTGGACACAAACCTTTGAAATGTTCCTCCTGCGAGTACAGTACCGCGACATCTTCTAATCTAAAATTACATATTGCAAGGAAGCATACTGAAGACAAACCCTTCAAATGTTCCTCCTGCGACTACGGTAGCGTGACATCTTCTGATCTGAAAAAACATATTGCTTGTGTGTCATCTTCCGATATGAGAAAACATATTGCAAGGAAACATACCggagacaaacctttcaaatgttcctccTGCGACTACAGAACCGTGACATCTTATACTCTGAAAGAACATATTGCAGGGAAACATACTGGggacaaacctttcaaatgttcctccTGCGACTACAGTACCGCGACATCTTCTAATCTGAAATTGCATATTGCAAATGATTCTTCAGCGCCCTCATCCTCTCAAGTGAAGACAGAGACCTCGGAAATAGTCAAAAATGAAGTTATCATTGATGATTCTCCGGGGCCTTCATCCCCTCTTCTAGTGAAGATAGAGTCCTCGGAAATGGTCAAGAATGAATTTCTCATTGATGACGAGATCTGGTCGAACGCTACAGAAGAGTCTCAGGATGAAGACACGGTTCTCATCAAGAAAGGAAACTCTCAAGctGTATATCCGCCCTTCGCTATATTTCTGGAAACTAATAGTGACCAGGGAGAAGTGTTATTTGATGAAAATGgTGATGATGATGTGGATCCTCTTGGTCTTGAAGATGATTCTGCAGAGAACAGTTCTTTATTATCAGCATATGAAAGGGAGAATTCTACTTCAGAGACTGCTAAAGGAAACAGTTCTGGGAGAGTTGCGTCATCTTCTGAAATGAGAAAACATTTTGTAAGGAAACATACTGAAGACAAACTTTTTAAATGTTCCTCCTGCGACTACAGTACCGCAACATCTTCTAATCTTAAATTGCATATTGCAGGGAAACATACTGGAGACAAATCTTTCAAATGTTCCTCCATCGATTACAAAGAAAATATGTATTCACTGACTTTATGCAAGAAGCGAAGCAGGAGTCTTTCTACAGACAGCAATGTGAGAGGTTCTGTAACATCTTCTTATCTGAAATCACATATTGCAAGGACgcatactggagacaaaccttACAAATGTTCCTCATGCGAGTACAGTACTGTGAGATCTCATGGACTGAAAATACATATTGCAAGAAAGCATAGTGGAGTCAAACCTTGGAAATGTTCCTCCTGCGACTACAGTTCCGTAAGCCCTTCTGAACTGAAATTACATATTGCATGGAAGCATACTGGAGAAAAACCTTTAAAATGTTCCTCGTGCGAGTACAGTACCGTTACATCTTCTGATCTGAAATCACATATTGCAAGGAAGCATACTGCAGAAAAAACTTACAAATGTTCCTTCTGCGACTACAGTGCCGTGACATCTTCTAATCTGAAATTACATATTGCAAGAAaacatactggagacaaacctttcaaatgttcctcGTGCGAGTACAGTACCGTTAATTCTTCTCGTCTGAAATCACATATTGCAAGGAAGCATACTGGAGAAAAACCTTACAAATGTTCCTCTTGCGAATACCGATGCGTGGACACTTCTGATCTGAAATCACATATTGCAAGGAagcatactggagacaaaccttACAAATGTTCCTCCTGCGACTACAGTACTGCGACATCTTCTGATCTGAAATTGCATATTGCACGGAAACATAATGGAtacaaacctttcaaatgttcctccTGCGACTACAGTACCGCGATATCTTCTAATCTGAAATCACATATTGCAAGGAAACATACTGGAAACAAACCTTTTAAATGTTCCTTCTGCGATTTCGGGCCTATTGACAACCCGACCCAGCGTGAGGACCGCGGCACCACATCTCCCGTCTAG
- Protein Sequence
- MKTESPTLKSDELIIDDSSAPSSSQVKTETSEMVKNEVLIDEEIWSNAIEESQDEDTVLIKKGNSQAVYPPFAIFLETKSELGDVIFDENGVDDVDPLGLEDDSAENSSLLAAYKRESSTSETAKGNSSATEGKICSQRPFLSNEQSSSLPTEMRMNGLQLKRHIRRNHTADKPFKCYSCDYSSVRLSSLKIHIARKHTGHKPFKCSSCDYSTVTSFEMRKHFVRKHTGDKPFKCSSCDYSTATSSNLKLHIARKHTGDKPFECSSCDYSCVASSDLKSHIAWKHTGHKPLKCSSCEYSTATSSNLKLHIARKHTEDKPFKCSSCDYGSVTSSDLKKHIACVSSSDMRKHIARKHTGDKPFKCSSCDYRTVTSYTLKEHIAGKHTGDKPFKCSSCDYSTATSSNLKLHIANDSSAPSSSQVKTETSEIVKNEVIIDDSPGPSSPLLVKIESSEMVKNEFLIDDEIWSNATEESQDEDTVLIKKGNSQAVYPPFAIFLETNSDQGEVLFDENGDDDVDPLGLEDDSAENSSLLSAYERENSTSETAKGNSSGRVASSSEMRKHFVRKHTEDKLFKCSSCDYSTATSSNLKLHIAGKHTGDKSFKCSSIDYKENMYSLTLCKKRSRSLSTDSNVRGSVTSSYLKSHIARTHTGDKPYKCSSCEYSTVRSHGLKIHIARKHSGVKPWKCSSCDYSSVSPSELKLHIAWKHTGEKPLKCSSCEYSTVTSSDLKSHIARKHTAEKTYKCSFCDYSAVTSSNLKLHIARKHTGDKPFKCSSCEYSTVNSSRLKSHIARKHTGEKPYKCSSCEYRCVDTSDLKSHIARKHTGDKPYKCSSCDYSTATSSDLKLHIARKHNGYKPFKCSSCDYSTAISSNLKSHIARKHTGNKPFKCSFCDFGPIDNPTQREDRGTTSPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -