Basic Information

Insect: Aradus depressus
Gene Symbol: -
Assembly: GCA_963662175.1
Location: OY759217.1:28376584-28390920[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.056 9.7 8.3 0.1 1 23 305 327 305 327 0.96

2 12 3e-05 0.0052 18.6 1.2 1 23 336 358 336 358 0.98

3 12 0.0001 0.018 16.9 0.5 1 23 365 387 365 387 0.97

4 12 0.00059 0.1 14.5 0.5 1 23 393 415 393 415 0.98

5 12 0.0001 0.017 16.9 3.3 1 23 422 444 422 444 0.98

6 12 2.1e-05 0.0036 19.1 2.4 1 19 450 468 450 472 0.93

7 12 1.3e-05 0.0023 19.7 0.2 1 23 478 500 478 500 0.99

8 12 5.5e-06 0.00095 20.9 0.8 1 23 506 529 506 529 0.96

9 12 0.00031 0.054 15.4 0.3 1 23 535 558 535 558 0.95

10 12 9.8e-06 0.0017 20.1 3.0 1 23 564 586 564 586 0.99

11 12 9.2e-06 0.0016 20.2 0.5 1 23 592 614 592 614 0.97

12 12 0.00014 0.025 16.4 0.2 1 23 620 644 620 644 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.056	9.7	8.3	0.1	1	23	305	327	305	327	0.96
2	12	3e-05	0.0052	18.6	1.2	1	23	336	358	336	358	0.98
3	12	0.0001	0.018	16.9	0.5	1	23	365	387	365	387	0.97
4	12	0.00059	0.1	14.5	0.5	1	23	393	415	393	415	0.98
5	12	0.0001	0.017	16.9	3.3	1	23	422	444	422	444	0.98
6	12	2.1e-05	0.0036	19.1	2.4	1	19	450	468	450	472	0.93
7	12	1.3e-05	0.0023	19.7	0.2	1	23	478	500	478	500	0.99
8	12	5.5e-06	0.00095	20.9	0.8	1	23	506	529	506	529	0.96
9	12	0.00031	0.054	15.4	0.3	1	23	535	558	535	558	0.95
10	12	9.8e-06	0.0017	20.1	3.0	1	23	564	586	564	586	0.99
11	12	9.2e-06	0.0016	20.2	0.5	1	23	592	614	592	614	0.97
12	12	0.00014	0.025	16.4	0.2	1	23	620	644	620	644	0.94

Sequence Information

Coding Sequence: ATGTCTCCTGAACCCGAAAAAGGCAGCTCAGTTTGTTTAATATGCAATGCTAGCATTGGTGTATCGACAAGGAATAGTTGCCCAATATTTAAACATAATGTTACATCTTCAGAACAGCCAGTTGCTAATATTCTTAGCGTTATATTGGGACAGGAAGTTCGACAAGAAATCGTGCATAGtgaagctatttgtaaaaagtgttttaaaCTGTGTAATGAAGTTGATGAACTCCAAGAACGTCTTACAGAAATCAAAATGGAACTAAACAATCATTATCAAAGAACACTGAGGAAGCTGGAGGGTGTGGAGGAGGAGGAGGTGAGTCCCACTGCTCAGCTGGTCATCTTCCCAAGGAACCCCGTCAAGACACCAGGGTCTACCGGGAGGCGAGGTAGACCCAGGAAACATCCCCTCATCGGCCCTCTACCCAAACCTGTTGATTTCATCGATATGGTGGAAGAAGACGAGGAAGAAGATGACGACAAAGGCGTCGGTATGGACGACGAACGAGACGCAGACTACGTGCCATCAGCGGCGTTGCGATCAGCCAATCGGACTGACAAACTGCGGCGGGTCCAAGAGGTGCTCATGTCGGGGAACAACAGCGAGGACATTGAGATCAAGTTGGAGGTGGTGGAGGAAGGAGAGGAGCCAACCGGTGAAACAGAGGATGAAGACAAGAGTGGGGTAGAGGACGCGCTGGAGTCCGGAGGCAAGGCAAAGAGGAAACCGGGTACAGGGGGCATCACCCCGAGCAAGAAGAAAGAGGACGAGATCACAGTCATACCTCAGATGATTGTGAGTCGGGAGAACAAAGTGTACACCTGCCTGTTGTGTCCTGCTGACACAAAGGTGCAAGGGGATGCCAGATACGTgatatcacatatgaaaaattCCCATGACATTCGTTTATACATCTGTGACATTTGTGGTTCGGAATTTCTCCGACGGGTGGATATGACAGCTCATCTGGAACAGCACGAGGCCAGCGAAGGAAATGGGGACTTCGAGTGTGACGTCTGCAATCGGGTGTTCAACAATCTCCGACTTTTCAGAGTTCACAAACGAATGCACATGGCCCAGCCTAAAACACACATTTGTGATGTTTGTGGAAAAGCTTTCTTGTCACGAAACATGTTAGAAGAGCACATGAACACGCACACGGGACTGAGGCCGTACAAGTGTATCGAATGTGGTAAGGACTTTGCCTCCAAATACTCAGCTAAGGCACACGAGAAGACACATCTGGACCGTCCCAGACCTCACAAGTGTAACACTTGTGGGAAGGGGTTCATCTCGGAACAGAATCTGCATCAGCATGAGAAGATACACACCGCGACCAGAACCCACACCTGCCAGATATGTGGCAAGTCATTCAGCTCCTCTCGGAATCTTGAGGTTCACTGTGTGATCCACACCGGCTACAAGCCCTATGTCTGTCGTCTCTGTGGCAAGGCCTTTGCCCGCAAAGCTGAGATAAGAGATCATGAACGAACTCACACAGGAGAGAAGCCGTACCAGTGCGAATTCTGTGGAGCTACTTTTGGacaaAGAAGTAATCTTCAGTCTCATAAGAGAGCCACTCATTATGACGACAAAAGATACCAATGTATTGAGTGTGGTAAAGCGTTCAAAAGACGTCGACTTCTGGACTACCATATCAAAGCGGCCCATACTGGCGAACGCCCATACAAATGTCAAATTTGTAATGCTACGTTTATATATCCTGAACATTTCAAGAAACACAGGAGGATCCACACCGGCGAGAAACCCTATCAGTGTGAGGTTTGTGGTAAAGCATTTAATTCTCGTGACAATAGAAATGCCCACAGATTTGTCCACAGCGACAAGAAACCCTACGAGTGTCTAGTGTGTGGGATGGGCTTCATGAGGAAGCCCCAGCTTTACAACCACATGCAAACTCAAGGTCACGTGAACGATACGATAGTAGTGAACCAGCCACGTCTGACGACAGATGAAGACTTCCTGGGTCAGCAGGCTGAGGATGTGGTGGAGATGTCCATCCTGGAGGCTCAGCCCAAGTGGCATCATGATCCTGTCCTCGATGAAAATGAGGTGGATGGGAGTCAGGATACCAAAATGTACATCAGTGAACTGAAGGAGCATGTTATCATCCAAGGCAAGCCTCAGGAGGTGGGAGAAAACGGCATAGAAGAGGTCGGACATTTGATCATTGATGGTCAGGTCCATTTTGCGGACAGCGAAGGTCTGGAGCTGGAGGCGACTGGAACGACTGGACTCGCTGAAGGACTGGAGGGAGTGGTGGGTACTGAAGGCTTCACAGTAGAAACAGGGACCGGATCTCATCCAGTCCACCTGGTACACATCACCCTCCCCGAGTCGGCCGATCAGCATGGAGCCACCTGGTTCACAACCCTCTACAATAATAAGGGATAA
Protein Sequence: MSPEPEKGSSVCLICNASIGVSTRNSCPIFKHNVTSSEQPVANILSVILGQEVRQEIVHSEAICKKCFKLCNEVDELQERLTEIKMELNNHYQRTLRKLEGVEEEEVSPTAQLVIFPRNPVKTPGSTGRRGRPRKHPLIGPLPKPVDFIDMVEEDEEEDDDKGVGMDDERDADYVPSAALRSANRTDKLRRVQEVLMSGNNSEDIEIKLEVVEEGEEPTGETEDEDKSGVEDALESGGKAKRKPGTGGITPSKKKEDEITVIPQMIVSRENKVYTCLLCPADTKVQGDARYVISHMKNSHDIRLYICDICGSEFLRRVDMTAHLEQHEASEGNGDFECDVCNRVFNNLRLFRVHKRMHMAQPKTHICDVCGKAFLSRNMLEEHMNTHTGLRPYKCIECGKDFASKYSAKAHEKTHLDRPRPHKCNTCGKGFISEQNLHQHEKIHTATRTHTCQICGKSFSSSRNLEVHCVIHTGYKPYVCRLCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFGQRSNLQSHKRATHYDDKRYQCIECGKAFKRRRLLDYHIKAAHTGERPYKCQICNATFIYPEHFKKHRRIHTGEKPYQCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPQLYNHMQTQGHVNDTIVVNQPRLTTDEDFLGQQAEDVVEMSILEAQPKWHHDPVLDENEVDGSQDTKMYISELKEHVIIQGKPQEVGENGIEEVGHLIIDGQVHFADSEGLELEATGTTGLAEGLEGVVGTEGFTVETGTGSHPVHLVHITLPESADQHGATWFTTLYNNKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -