Adep027911.1
Basic Information
- Insect
- Aradus depressus
- Gene Symbol
- PRDM9
- Assembly
- GCA_963662175.1
- Location
- OY759220.1:3108690-3122238[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.9 7.5e+03 -1.5 0.1 15 25 150 160 144 162 0.82 2 12 0.011 14 7.2 1.0 16 33 377 395 367 400 0.78 3 12 0.021 27 6.3 0.7 18 30 407 420 395 428 0.81 4 12 0.031 40 5.8 0.5 18 29 435 446 424 457 0.84 5 12 0.071 90 4.6 1.2 18 32 463 478 452 484 0.81 6 12 0.011 14 7.2 1.0 18 30 491 504 479 512 0.81 7 12 0.011 14 7.3 0.9 18 30 519 532 508 540 0.83 8 12 0.088 1.1e+02 4.3 1.5 18 32 547 562 536 568 0.81 9 12 0.013 17 7.0 1.0 18 32 575 590 563 596 0.82 10 12 0.014 18 6.9 1.1 18 32 603 618 591 624 0.82 11 12 0.0091 12 7.5 1.5 18 33 631 647 619 653 0.79 12 12 0.011 14 7.2 1.4 18 33 659 675 648 680 0.81
Sequence Information
- Coding Sequence
- ATGGCTCATTGTGGGCCATCATGGAGTTCTACCGACCATGATGAAACTGTTGAAGAAGTGAGCAGGCGGACTTTGAGATCTGAAGAGGAACTGGCTGAACCAACTGGAAGTGGTTCTACAGATAAAGATAACACAACTCAAGAAGATAGAAGTACATCGAAGCCGAGGACTAAGAAGGACAATTCTTCTGAAAGTTGTTCTGCAGACAAAGAGAACACAGCTCAAGAAGATAGAAGTACATCGAAGCCGAGAACTAAAAAGGCCAAGTCTACTGAGGCAGTAATGTTGGCTAACGATTATGAAGACATGTTGGAGACCTACCTCTCTGAACTGATCACTATTGATTATGCTATCGAAATAATTTCATCATATTTACCGGAATGGCTGTCTAATGAaaATGCTTCATCCAAATTAGATTTCGAAGCTTCAACTGAATCAGATGAAGATCGTTTGATATattgcgATGTTTGTCAGAAGAAGTGGATGAACTTCTGTCCGCAAGGCCATCAGACCCTCGTCAAAGACAAAAAGGAAGGAAGCACTGCTAAGGAATCTCTTCCAGAGGGACTGTATTTAGCTAGATCCAGTGTGAAGCAGTGTGGACTGGGGGTTTGGTCCAGAGAAGTGTTGGAGGCAGGCACTGTCTGGGGCCCCTTCAGAGGCCGTCATGTTCCCGCCTCATCACCCAAGAATGGCTACATCTGGGAGataaaatttgAGGGTAAAGTACAATTTTGTATTGATGGAAGTGATGTGGTAACTTCGAACTGGATGAGATATGTAAATTGTGCCCGAACCGACACTGAGTGTAGCGGTATCGCCTTCCAGTACAAAAAGGAAATATACTTTCGGACCTGCCGACGAGTGGAACCTTCCACGGAAATACTTGTGTTTTACAATACACACCTGAAAACAGCCTCACTTTCCAATTTTACTAAAATGTCGTACCCCTGTGGCAGCTGCACCACGGCTTTTTCATCTCTACAATATTTAGAGAAACACAAGAAACGTTGTCATGGAAACAAACTCTACATGGATGGATCAACAGAAGTGCAACATTTACAAACAAACGAAATTAGTAGTGAGAAACCAAATAGACTTAGTAAGAACATTCAGACCTGTAACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACACAGTCGTTTAGTTTAACATCACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACACAGTCGTTTAATTTAACAGTACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACACAGTCGATTGATTTAACAGTACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTAGACATTCGGTTAGTTTAACATCACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACAAACTCGGTTAATTTAACAGTACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACAAACTCGGTTAATTTAACAGTACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTAGACATTCGGTTAGTTTAACATCACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACACAGTCGGTTAGTTTAACATCACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACACAGTCGGTTAGTTTAACATCACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACACAGTCGGTTAATTTAACAACACACAAGAGGATCCATAGTGGTGACAGACCTTATGTGTGTAACATTTGTAACAAAGCTTTTACACAGTCGGTTAATTTAACATCACACAAGAGGATCCATAGTGGTGACAAATGA
- Protein Sequence
- MAHCGPSWSSTDHDETVEEVSRRTLRSEEELAEPTGSGSTDKDNTTQEDRSTSKPRTKKDNSSESCSADKENTAQEDRSTSKPRTKKAKSTEAVMLANDYEDMLETYLSELITIDYAIEIISSYLPEWLSNENASSKLDFEASTESDEDRLIYCDVCQKKWMNFCPQGHQTLVKDKKEGSTAKESLPEGLYLARSSVKQCGLGVWSREVLEAGTVWGPFRGRHVPASSPKNGYIWEIKFEGKVQFCIDGSDVVTSNWMRYVNCARTDTECSGIAFQYKKEIYFRTCRRVEPSTEILVFYNTHLKTASLSNFTKMSYPCGSCTTAFSSLQYLEKHKKRCHGNKLYMDGSTEVQHLQTNEISSEKPNRLSKNIQTCNRPYVCNICNKAFTQSFSLTSHKRIHSGDRPYVCNICNKAFTQSFNLTVHKRIHSGDRPYVCNICNKAFTQSIDLTVHKRIHSGDRPYVCNICNKAFRHSVSLTSHKRIHSGDRPYVCNICNKAFTNSVNLTVHKRIHSGDRPYVCNICNKAFTNSVNLTVHKRIHSGDRPYVCNICNKAFRHSVSLTSHKRIHSGDRPYVCNICNKAFTQSVSLTSHKRIHSGDRPYVCNICNKAFTQSVSLTSHKRIHSGDRPYVCNICNKAFTQSVNLTTHKRIHSGDRPYVCNICNKAFTQSVNLTSHKRIHSGDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154684;
- 90% Identity
- iTF_00154684;
- 80% Identity
- iTF_00154684;