Basic Information

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0085 1.4e+02 4.0 0.0 21 42 29 50 16 54 0.85

2 12 0.011 1.9e+02 3.6 0.0 21 42 53 74 45 77 0.88

3 12 0.0091 1.5e+02 3.9 0.0 21 42 65 86 55 89 0.75

4 12 0.012 2e+02 3.5 0.0 21 42 77 98 70 102 0.90

5 12 0.011 1.8e+02 3.6 0.0 21 42 89 110 81 114 0.88

6 12 0.01 1.7e+02 3.7 0.0 21 42 101 122 92 126 0.86

7 12 0.012 2e+02 3.5 0.0 21 42 113 134 106 138 0.90

8 12 0.0098 1.6e+02 3.8 0.0 21 42 125 146 118 155 0.86

9 12 0.0028 46 5.5 0.0 23 41 151 169 131 185 0.58

10 12 0.0039 64 5.1 0.0 23 42 187 206 177 227 0.60

11 12 0.0029 49 5.5 0.0 23 41 223 241 207 257 0.55

12 12 0.016 2.6e+02 3.1 0.0 21 42 257 278 249 278 0.88

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0085	1.4e+02	4.0	21	42	29	50	16	54	0.85
2	12	0.011	1.9e+02	3.6	21	42	53	74	45	77	0.88
3	12	0.0091	1.5e+02	3.9	21	42	65	86	55	89	0.75
4	12	0.012	2e+02	3.5	21	42	77	98	70	102	0.90
5	12	0.011	1.8e+02	3.6	21	42	89	110	81	114	0.88
6	12	0.01	1.7e+02	3.7	21	42	101	122	92	126	0.86
7	12	0.012	2e+02	3.5	21	42	113	134	106	138	0.90
8	12	0.0098	1.6e+02	3.8	21	42	125	146	118	155	0.86
9	12	0.0028	46	5.5	23	41	151	169	131	185	0.58
10	12	0.0039	64	5.1	23	42	187	206	177	227	0.60
11	12	0.0029	49	5.5	23	41	223	241	207	257	0.55
12	12	0.016	2.6e+02	3.1	21	42	257	278	249	278	0.88

Coding Sequence: ATGAAGCAGTTCCTGACAAACATGGACGCGATTGGCTTTTTAGTCGTCCATCATCAGGCtgAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGATCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGTATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACCAGTGGCGTGGCATTAGTCAGTCTTGGCTAGCAGACTAA
Protein Sequence: MKQFLTNMDAIGFLVVHHQAESWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLADQWRGISQSWLAD

Sequence clustering based on sequence similarity using MMseqs2