Alei075295.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069435.1:107204191-107205489[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0023 0.56 13.4 3.0 1 23 50 72 50 72 0.96 2 13 0.00022 0.053 16.6 0.9 2 23 77 99 76 99 0.96 3 13 0.031 7.4 9.9 0.4 1 23 105 127 105 127 0.98 4 13 2.4e-05 0.0058 19.6 1.4 1 23 132 154 132 154 0.98 5 13 0.03 7.1 9.9 4.8 1 23 160 182 160 182 0.97 6 13 0.025 6.1 10.1 0.7 1 23 188 211 188 211 0.95 7 13 0.0015 0.35 14.0 2.7 1 23 216 238 216 238 0.97 8 13 0.22 52 7.2 0.3 1 23 243 265 243 265 0.96 9 13 0.21 50 7.3 1.7 1 23 271 294 271 294 0.91 10 13 0.0015 0.35 14.0 2.5 1 23 300 322 300 322 0.98 11 13 0.0043 1 12.6 0.4 2 21 329 348 328 351 0.88 12 13 0.054 13 9.1 2.4 2 23 358 379 357 379 0.96 13 13 0.0011 0.27 14.4 1.5 1 23 385 407 385 407 0.98
Sequence Information
- Coding Sequence
- ATGTTGAAAACACCGAATTCTTCCACGGCTGAAACGCTTCCAGAAACATCTCCAAATGTCAATTATGAGTTCGAACGTCTCGACATAAAAGTCGAGCACTGTTACGATCTTCCATCTGAAGATGAAGAACCAATCGTTAACTATAAATTCTCATGCCCCGATTGTCTATACCGCACCAACACCAAACACAACTTAACCCAGCATTCGATAAGGCACAGGCAGCGGTTAAAATGCAACGATTGTGATTACGAAACGAGCATTCGGGGTAACTTAAAGCGTCATTACTTAACAAAACACACCGTCGATAAAAACTACACGTGTGAGTATTGTCCGTTTAAAACTGCAATTAAAGGGTATTTATCGATGCATGTTTTAAGGCATATTAGAGACGGGTTCAAGTGCGAACAATGCGATTACAAAACGACGTATAAAGGCGAGTTGAAGCGGCATTTACTCGTCCATTCAGgcactaaaaattttatgtgttttaaatgCGATTACAAAACCCACAATAAGAAGTATTTGCGAAACCACGTGTTGATTCATATGGACGTTAGGAACTTTGCGTGTAGTAAGTGTGAGTATAAGACGGTTTCTAAAGGTCGGTTGAAGGAGCATTACTTGGTGCAGCATTCGGGTACTATTTTTGCTTGTAATAAGTGCGAATATAAGACTGTGtataagaatcatttaaaaCGGCATGTGTTGGTGCATGAGGGTAAGAATTATGCGTGTACGCAGTGCGATTACAAAGCTGTGTTCGAAAAGGATTTTGCTATACATTTAACGAAACACACTGGTGTGAAAAATTACGCTTGTAATCAGTGTGAGTTTAAgacgttttataaaaagtatctgAGCACGCATATTGCGTTGCGCCACTCGAAGGTTAAAGAATTCTCGTGCGATCAGTGCGATTTCAAAGCAGTTAGTTCGAGTTTTCTCAAAAAGCATTATCGGAAACACTTGCAGAGTCAGCAGTTGAAGTGCGGGCAGTGCAATTACACCACAGTTAGTCGGTACACGTTGAGGAGGCATGGGGAGGCTATGCATTCGTCTAAAGAAGACTTGACGTGTTTGGAATGTGGGCACGAAGCGGCGTCGAGGCGACACTTAACTGAACACAAAATGAAACACATTAAAGAGAAGAACTTTAAGTGCGaatattgcaattttgaaaCTGTTTATAAACGAGCGTTGGCTAGGCACAAACTCACGCACCAAAAGACGCCCGCGTTTAGTTACGTCGAAGTAATGAAATCGGAAATTAAAATGGAGTTTGAGCCGGAGCTCGATTGA
- Protein Sequence
- MLKTPNSSTAETLPETSPNVNYEFERLDIKVEHCYDLPSEDEEPIVNYKFSCPDCLYRTNTKHNLTQHSIRHRQRLKCNDCDYETSIRGNLKRHYLTKHTVDKNYTCEYCPFKTAIKGYLSMHVLRHIRDGFKCEQCDYKTTYKGELKRHLLVHSGTKNFMCFKCDYKTHNKKYLRNHVLIHMDVRNFACSKCEYKTVSKGRLKEHYLVQHSGTIFACNKCEYKTVYKNHLKRHVLVHEGKNYACTQCDYKAVFEKDFAIHLTKHTGVKNYACNQCEFKTFYKKYLSTHIALRHSKVKEFSCDQCDFKAVSSSFLKKHYRKHLQSQQLKCGQCNYTTVSRYTLRRHGEAMHSSKEDLTCLECGHEAASRRHLTEHKMKHIKEKNFKCEYCNFETVYKRALARHKLTHQKTPAFSYVEVMKSEIKMEFEPELD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -