Alei105885.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- Znf423
- Assembly
- GCA_035610365.1
- Location
- CM069439.1:15457092-15460177[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00013 0.032 17.3 0.3 1 23 10 32 10 32 0.98 2 19 8e-05 0.019 18.0 3.8 1 23 46 69 46 69 0.96 3 19 0.61 1.5e+02 5.8 0.2 2 23 100 122 99 122 0.93 4 19 1.6 3.9e+02 4.5 0.1 1 20 160 179 160 180 0.93 5 19 0.011 2.7 11.3 0.0 1 23 274 296 274 296 0.97 6 19 0.0002 0.048 16.7 0.0 2 23 311 332 311 332 0.94 7 19 2.2 5.2e+02 4.0 0.9 3 23 342 364 340 364 0.78 8 19 0.68 1.6e+02 5.6 2.7 1 23 369 392 369 392 0.96 9 19 0.37 90 6.5 3.8 2 23 455 477 454 477 0.94 10 19 0.12 29 8.0 0.4 1 23 533 556 533 557 0.94 11 19 0.00049 0.12 15.5 4.4 2 23 568 589 567 589 0.97 12 19 0.0015 0.37 14.0 0.4 1 23 598 620 598 620 0.97 13 19 1 2.4e+02 5.1 1.2 2 23 628 649 628 649 0.96 14 19 9 2.2e+03 2.1 0.1 1 13 695 707 695 711 0.85 15 19 0.014 3.3 11.0 0.5 1 23 758 780 758 780 0.95 16 19 0.086 21 8.5 1.9 1 23 788 810 788 810 0.95 17 19 0.0013 0.31 14.2 0.3 1 23 818 840 818 840 0.97 18 19 0.56 1.3e+02 5.9 1.8 1 23 847 869 847 869 0.94 19 19 1.4 3.3e+02 4.7 0.1 2 20 901 918 900 919 0.75
Sequence Information
- Coding Sequence
- ATGAAGACTCATGACAACAGTAAACCTTTTcgttgtttaatttgtaatagaGGATACAACACAGCAGCAGCGCTTACGTCTCACCAACAAAGTCATGCAAAGCAAAATTCGGAAGGTCAGCAAAGTCCCGGCAGTTTTAAGTGTCACCATTGCACAGAAAGCTTTTCTAGATACGATTTATTGCAGATTCATGTATCGTCTGTTCACGCAACTCTTGGTCTCGCAAATCAACAAACAACGCCCTCTAATTGTCTACAAGAAGGTGCAAATAAAGCTCTTATGGAACTGCCAAAATGGGTGTGCATGTACTGCGGTCacgattttttaactttagatgAAATGCAACAACACGTAAATTTAGAACATAGCGCTATTATAAATGGTAATTTTgcgaataacaatttaattaattccgaAACTTCTTCACCTTTAAACGATAAATCTTCGCCGGTACACGAGACCAACAGCTCGCCAACTTATGCTTGTGACAGTTGCACTATGCAATTTGACTCGATTGAAAAATTAAGAGTACACGAAAATTGTATACATTGGAAACCACCACAAGCGTTAAACTCAAATTCATCAGTATTTTTAAAAGACTACAATTCTTGTCTTCAATCGGCGCAAAGTATAAATGCAGAAATACAAAATTCTCCAAATTCGCAACCAATTCAGTCCCATCCAACAGACTTAAGTCGCAAACGACGAGGTAGCGACATGGAAATTTCAGTTTTACCAAAAAGAGAAACTAACGACGTTAGCATTCAAAATTTAGCTGGCAGTTCCCACGacactttaaaaaaagaagaatggtCCAGTTACATCTGTAGTATATGTGGAACACAATTACCAAATTTTGCTTCTTTTATGGTACATATGGACATACACATGTCAGTCAATGCTACTCCCGCTAATGTGATATTAGGTGGGTACTGCCCTTTATGTGGCGAAGCTTACCGAGACCAAACGGAACTTAATAACCACATAGTTTTACACACTCTTTCGTATAAACCCGGTTGGTGTTGTAgagtttgtaaaaaagtttttaacgaGGATTTAGAAGATTTACAAAGGCATTTGATCGAAAACCATACTTGTACTACCTATAGATGCTGCGTCTGTGAACaactttttgaaacaaaaacggCAATGCtcATGCACCTCACTAAGAAGCACAGTAGCGAATGTCAACATTATCGTTGCAAATTTTGTCCAGAACAAATATTTCATAACCAAATCAGCGCAGAAATGCATATATCCCAGCACGTTCCTCGTTTGTTTAATACATCTCGTAAATCATCTTATGGTGCATTTTCTTATCGTTCAGATTACAATCGAATTGAAAGGAtggttaaaaatttacaatgtccTTATTGCCGACAATGTTTTAAAGGCGAATATCTGCATCAGATGCATATGTTAAAAGAGCATAAGGATTATAGAGAGGCGCACAGCTCACGAATGACAGAAGATTGTACACTTGAACAATTATCAAACACCAGAGCACAGCAAGAAAATTCTTCTAATATGCTCTATTCTAACAACACATCGACGTCTGATAATATTTCTCGATACGATAGAAATATGACTGATAGTTTTATATGTGATATATGCGGCTCGACTGACTTTAGTAATGATACCGAATTAGCGGCGCATAAAAAACTTCACCACGTTAAAACTAAAGTAGGACCAGTTAGTTTACAATGCGCGTATTGTAACGAACACTGTAAATCTCGATCAGACTTAGAAAACCACATGAAGAACCATCAAATCAACAGTAGCAAAGGCAAACACAAATGTAACATTTGCGACGAGATTTACACGTCAGCTATTACATTAGCCGAACATAAACTTTCGCATTGTAAAATAGTTTCTGGCAATACTTGCACACAATGTAAAACGGTTTTAAGTGACGACCAATCGTTTTATTCTCATCAATTGCAACACAGTGCAGTTTTGAGCAAACAGAACTCTCAAATATCATTACCGGCAAATTGTATAATATGTTGCCAAACCCTTCAAACAGATGTAGAAATTAAACTTCACGCTAACTTTCATTTACAACATTTGATCCAAAAAGAATTTCTCTGTAGTATgtgtagtagaatttttgaCACGCGTACTGGAATTACAGTTCAAGGTTATGAAAAAAGTTCCGAAAACTTACAAATTGCGATATGCAAAGAATGTATGAGTAAATGTGGAAATAACAACAGTTCAAATAGTCCAAGACCAAAATCTTTAAAGTCGGAAAATGCCGATATAAATCTATATTCTTGTATCAAGTGTCCACAAACTTTTGAGAACGAGAGTGATGTAAAAAAACACGCAACTACTCATATTGTTAGTGAAGGCGCTAATCACGAGTGCCATATTTGCAGAAGTATTTTTTCATCTTCTTTGAAGCTTCAGTTACACGTGATTGAGCATAGTTTTTTTGGTACCGGTCAATTTAGATGCTATATTTGTAGTTCAGTGTTTACAACAGCAAATGGACTACTTTCGCATATGCTGGAACACGGTGTGAACTCTAAACCTTACGAATGTGTTACGTGTCAGATGAAGTTCTTTTTTCAAACAGAGTTGGATAATCACAAGTATGAGCATGTGTTAGCTCGTTCAATTGCTCAACCGATTATCGTTAATAATAAGTGCGAATCTGAAGAATCTTCCGAAAAAATTAAACGCGAATTAATCGTAAAATGTCCATACTGTGATGTTTCGACTTCTCAAACTTATATGGATGTACATATTCGATGCTGCAGTCAAAACCCCGACATAAAGAAGAAACAAGACGACAAacgaaaacataaatttttggaaaacaatAATATCGCGTCTTGCGGtgaagataaaaaaacataa
- Protein Sequence
- MKTHDNSKPFRCLICNRGYNTAAALTSHQQSHAKQNSEGQQSPGSFKCHHCTESFSRYDLLQIHVSSVHATLGLANQQTTPSNCLQEGANKALMELPKWVCMYCGHDFLTLDEMQQHVNLEHSAIINGNFANNNLINSETSSPLNDKSSPVHETNSSPTYACDSCTMQFDSIEKLRVHENCIHWKPPQALNSNSSVFLKDYNSCLQSAQSINAEIQNSPNSQPIQSHPTDLSRKRRGSDMEISVLPKRETNDVSIQNLAGSSHDTLKKEEWSSYICSICGTQLPNFASFMVHMDIHMSVNATPANVILGGYCPLCGEAYRDQTELNNHIVLHTLSYKPGWCCRVCKKVFNEDLEDLQRHLIENHTCTTYRCCVCEQLFETKTAMLMHLTKKHSSECQHYRCKFCPEQIFHNQISAEMHISQHVPRLFNTSRKSSYGAFSYRSDYNRIERMVKNLQCPYCRQCFKGEYLHQMHMLKEHKDYREAHSSRMTEDCTLEQLSNTRAQQENSSNMLYSNNTSTSDNISRYDRNMTDSFICDICGSTDFSNDTELAAHKKLHHVKTKVGPVSLQCAYCNEHCKSRSDLENHMKNHQINSSKGKHKCNICDEIYTSAITLAEHKLSHCKIVSGNTCTQCKTVLSDDQSFYSHQLQHSAVLSKQNSQISLPANCIICCQTLQTDVEIKLHANFHLQHLIQKEFLCSMCSRIFDTRTGITVQGYEKSSENLQIAICKECMSKCGNNNSSNSPRPKSLKSENADINLYSCIKCPQTFENESDVKKHATTHIVSEGANHECHICRSIFSSSLKLQLHVIEHSFFGTGQFRCYICSSVFTTANGLLSHMLEHGVNSKPYECVTCQMKFFFQTELDNHKYEHVLARSIAQPIIVNNKCESEESSEKIKRELIVKCPYCDVSTSQTYMDVHIRCCSQNPDIKKKQDDKRKHKFLENNNIASCGEDKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01518347;
- 90% Identity
- -
- 80% Identity
- -