Alei097848.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069438.1:7304457-7332165[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.91 2.2e+02 5.2 0.4 1 23 31 55 31 55 0.91 2 13 1e-05 0.0025 20.8 3.0 1 21 63 83 63 84 0.93 3 13 0.00046 0.11 15.6 1.4 1 23 92 114 92 114 0.99 4 13 0.00039 0.094 15.8 0.7 3 23 122 142 120 142 0.97 5 13 0.00036 0.086 15.9 3.4 1 23 148 170 148 170 0.93 6 13 1.2 2.8e+02 4.9 0.2 1 11 176 186 176 186 0.92 7 13 0.00049 0.12 15.5 1.6 3 23 261 281 260 281 0.97 8 13 0.00018 0.042 16.9 3.2 2 23 320 342 319 342 0.89 9 13 0.0015 0.35 14.0 0.8 1 21 352 372 352 373 0.94 10 13 0.0047 1.1 12.4 4.4 1 23 381 403 381 403 0.98 11 13 2.5e-05 0.0061 19.6 1.3 1 23 409 431 409 431 0.95 12 13 0.0006 0.14 15.2 0.6 1 23 437 459 437 459 0.95 13 13 3.4 8.2e+02 3.4 3.4 3 23 467 487 465 487 0.93
Sequence Information
- Coding Sequence
- ATGGCTATAATCGCAATTTCTATTACTGCTTATCTTCTATGTGATGCTTTACGCCAGGATCTTAGATGTAGACGCAGTCATaagAAGAAACACAAATGTAAAATATGCCCGGACGTGATTTTTGAAACTGAAGAAGAATATTTCCTACACATAAACGATACTCATAAAGGTAAATTTGGCGATTACCACATGTGCAGCGATTGCggcaaacaatttaaaacgaaaAGCGAATTGACGCATCACAATAGGTCAAAATGCGGCACAGTTAAACAATACACATGCAAGGTCTGCGACCAAAAACTAATGACGGCAGGTTCTTTGCACAATCACATGCTGAGACACACGGTTAAGTGCTCGAATATGTGCGGATTTTgtggaaaaatgtttttgacaagAGGACAGCTAAAAGTTCACGAACGGACGCATACTCAAGAAAAGGCGTTTGTTTGCAACgTTTGTGGAAAAGGATTTTGTCATCGTCAGAGTTTGATAACGCACAGTACTTTACACACTGGCGTAAAACCGTATCAGTGCGAAAATTGCGGAAATGCATTCAGCTGTGTTGGTAATACTGATAATAAAGAGGTTGAGTATGAATTTATGGATGCAGTGTGTGAAAATGATGTTAGTAGTTTAGCTGATGTGATCCAAGAAGAAGAACCGACTTCTCAAAATAAAAACGACGAAACTGGTACTAtcgaagaaacaaaaaaatctgaatCGGGTTTTGAAGAGTTTTTAGTGGATCGTGGTATCGTTGAAGAAACGTTTGAAAGCTTGTGTCGGTATTGTGGGAAAACTTACACGAATATGAGGTGGTTGTTTCGACATGAGAAGCAACACGAAGGAGTGCACGCAAAGATTTCGGATCAATTTAAGTGTGCGTGTTGTAAAATGACGTTCCCTACTCGAGAGGAGTGTAAAGAACACAAACAGCGGACGCACGCGGATTtattaagTTGCCAAGATTGCGATAAAATATTCTCCAATAAGGATTCGTTGCGTTCTCACTGTAGGTTATTCCACAAAGGTCTTCCAAAGAAAATCTACACTTACGTTTGCGAAAAATGCGGCGTGCAATTTAGGCAAAAGGCTTTTTTGAACTATCACAAGAAGAACAACTGCGGTTCGGGACCAATCTACGAGTGTCATGTGTGCGGAAAAGGTTTTCACAGCATCCACACGCGTTGGTCGCATCTGCGTATACACGATccgaagaagaaatttttgtgtaaatactgTGGGAAAAGTTTCAGGTGGAAAGGGCAGTTGAAAGTGCACGAGCGTAGTCACACCGGAGAGAAGCCTTTTAAGTGTTTGTACTGTCCAAAAGCGTTTGGGTATCGCGAAAGTTTAATTACTCATAGCAGCTTGCATACGGGTATTAAACCACACTTGTGCCAAGCTTGCGGTTCGCGATTTTCGTGTATTGGGAATTTGATTAAGCATAGGACTACACACGCGAGTACTTGTGGAGTATGGTACTCAAAGAACcagtga
- Protein Sequence
- MAIIAISITAYLLCDALRQDLRCRRSHKKKHKCKICPDVIFETEEEYFLHINDTHKGKFGDYHMCSDCGKQFKTKSELTHHNRSKCGTVKQYTCKVCDQKLMTAGSLHNHMLRHTVKCSNMCGFCGKMFLTRGQLKVHERTHTQEKAFVCNVCGKGFCHRQSLITHSTLHTGVKPYQCENCGNAFSCVGNTDNKEVEYEFMDAVCENDVSSLADVIQEEEPTSQNKNDETGTIEETKKSESGFEEFLVDRGIVEETFESLCRYCGKTYTNMRWLFRHEKQHEGVHAKISDQFKCACCKMTFPTREECKEHKQRTHADLLSCQDCDKIFSNKDSLRSHCRLFHKGLPKKIYTYVCEKCGVQFRQKAFLNYHKKNNCGSGPIYECHVCGKGFHSIHTRWSHLRIHDPKKKFLCKYCGKSFRWKGQLKVHERSHTGEKPFKCLYCPKAFGYRESLITHSSLHTGIKPHLCQACGSRFSCIGNLIKHRTTHASTCGVWYSKNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00153906;
- 90% Identity
- -
- 80% Identity
- -