Alei054668.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069434.1:22635338-22642650[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0016 0.39 13.9 0.9 3 23 325 346 323 346 0.95 2 11 0.00035 0.083 16.0 0.4 1 23 352 374 352 374 0.99 3 11 1.6e-05 0.0038 20.2 1.4 1 23 431 454 431 454 0.95 4 11 4.5e-06 0.0011 21.9 0.9 2 23 470 491 470 491 0.98 5 11 0.0094 2.3 11.5 3.9 2 23 669 691 668 691 0.95 6 11 0.00016 0.038 17.1 1.5 1 23 697 719 697 719 0.98 7 11 0.72 1.7e+02 5.6 0.1 2 23 724 746 723 746 0.93 8 11 0.0097 2.3 11.4 3.6 2 23 753 774 752 774 0.95 9 11 0.00032 0.077 16.1 1.0 1 23 780 802 780 802 0.95 10 11 0.059 14 9.0 3.2 1 20 806 825 806 828 0.93 11 11 8.9e-05 0.021 17.9 2.0 1 23 838 861 838 861 0.98
Sequence Information
- Coding Sequence
- ATGTATTACATCACAGATTGTTGTCGTGTGTGTCTTAAAAAGGATAATAGTCTTGTTGACATAATCAAGacacaaacaaaaacagattCTCTAATAAACAAACTGAAATTATGCGTATCAGAAGTGGAATGGTCGACGAACAACTGCATCTTAATGTGCCCTACTTGTATAGACAAATTAAATTCAgcttatgaatttaaaaaccaatGCCTTCAATCGACGAAGGTATTTGAAAACTATAAAGTTGAATTAAACGAATCTCATAGTAAAAACAAGGAAATGATCGTAACTGCTAAAGATACGAACGTTAAAAATGATTTAGcatttgtaaatgttaaattagATCAACTATCGAAGTCACAAGTACCAAATATATTGTTAACACCGAATCATAGTACTAGCACAttccaaaatatatttttgaatttacttccATCGACCACAATTAAAGTAAGCCAACCGAACATATCACTTGTAAATCAAAAACCACTGTTACCCACACAAGACGCTAACCAAAACATGTTTCTGAACATTAACAATACCCTGCATAAAATTCTACCAATGATACCaacaaacaatgacattaaaTTAATGAAACCTTTAGAAGATGTAAACATTACGAAAATATTAAATGAAAGCAATTCAGAGGAGTTAAGCGTGGAAATTGATCCGACTTGTTTTGATTGTGTTCCAGAAGATGAACAAGCTCAATCTGAAGACACTAGTATTCCAGAAGATTGGGAAGATTTAATATCATCCAGTAAAATTACATCTGATACAACTGTTACTCTAAAAGATACTGCTGAAGTATTTGAACATACAAATGATTTTACACCACCTATAAACAAGTTTGTGCCAATTCGGCcgaaattaaacaacaaaaagaataatttaaaacatgacGAAAAAATGAtggaattttttaatatagatcATTTCATGGCAGATAAACATCAAGTTCGAACTGTGATATGTGAGGATTGTGGTCAAACTTGCGATAATATTAAGTCATTACATGCACATATTAGACAAGCGCATTCAGGTAACTTCCCTTATAAATGTACAGAATGCTCGTCGGTTTATGCCTTGCAAGCACAGTTTGAGGCCCATATGAGAAAACACGATATGCGAAAACCAGACTCTTTTACAAAGGAAATGATTACTCTCGAAGATTTATCACAACAAAATGAATCAATATTATTTCCTATGCTGGGTCAGACTGATTCTTCTACCACTGATTCAACTATGGATGATGGGGATGATGAAGGTGTGCCTAATTTAAGCCTCGAGTTTAGATGCGAGATTTGTCCGAGAAGTTTTTCAAATGCACAAGCACTTACtaggcataaatttaaaaagcatCAACAAACtagaaagaaatattttgtaaaaggtATGAAAAATGCTAAATGTGATATTTGCAATCGAGAATTCTCCACTCAGTCGTATTTACAGTTACATATCAAACTACATTTTCGTAAAATGGGTTAtagatttaaagtttttgacaaGAATAGATATGTAACTGATAACCAAGATGAAGAGAAGGATGCTGATGGAGACGAAATTGAAAAATGTGATAAACCTTTAGAAGATAAGGAATTACATGAAAAAATGGAAGAAGAGAAGTCAGAAAACTGTGATGAAACGTCTGAGGAACAAGAATCAAATACTCAAGgattaaagattaaaattaatttgaaaaatttgattaattcgGAGGAACCAATCCAGAACGTAGAACAAACCAAGAGCGTTTCCGAAATTACACCAATGGATGTGGACCTGCCCAGTGAAGAGATACCAGTTACCGAGAGTGACAGTATAGAAGTTACACCGGAGGCAACAGCACCATGTAATCAAAATCAAGACCATGATAGCAGCGTGGAGGAAAAGGAGAAGAACGAAGAAATCGAAATTGAAGAAAGTACAGAACTCAAAgACGAGGGGTTACCGCACATACAACTACCCCCAGTAACAACCGAACTAGTGAATGGAAAGCAACAATGCTCGTTTTGTCTTAAATTGTATCGAAGAAAACACGATTTAAAAAGGCACTTAAATAATATTCATCTAAAGGCCATACAGTACGTTTGCCACCTGTGCAACATACCTTTTTACGAGGCCTTTCAACTAACGAGGCATCTTCGGCAACACAATGGTTTTGTACGTTGTGGACTCTGTTTGAAAGAGTACAGTATATTGCGAGATTTAAAACTTCACATCAGTGCGGCGCACGATAATTCGGCTCTTTGTCAATGTGGTACCTGTGGTCAATCGTTTGAAAAAGTCAGGTACTTAAGAGAGCACATGCACGAACACGACAAGGGCATAATATACAAATGCCATTTGTGTCCCGAAGAATTTAAGGAATCGCGGGATTTATCCAGACATTTAGTCGAGCACAGTGGAATGTACGCCTGCAATATTTGTCATACTACTTTTTCTGCTGAGCAAGAATTAAACAACCATAGCAAATGTCATTTCGATGATCCAGGAAACGAACGAAAATACAAATGCGAAATTTGTCCCAGCAAATTTAAGAAGAAACGATATTTAATGGCGCATATTAAGAAAACGCATGCAAGTAAAAATAGAGATATAGTATCTGCAAGGTTAGAGCTCGATTGCAAATCTGCTTAG
- Protein Sequence
- MYYITDCCRVCLKKDNSLVDIIKTQTKTDSLINKLKLCVSEVEWSTNNCILMCPTCIDKLNSAYEFKNQCLQSTKVFENYKVELNESHSKNKEMIVTAKDTNVKNDLAFVNVKLDQLSKSQVPNILLTPNHSTSTFQNIFLNLLPSTTIKVSQPNISLVNQKPLLPTQDANQNMFLNINNTLHKILPMIPTNNDIKLMKPLEDVNITKILNESNSEELSVEIDPTCFDCVPEDEQAQSEDTSIPEDWEDLISSSKITSDTTVTLKDTAEVFEHTNDFTPPINKFVPIRPKLNNKKNNLKHDEKMMEFFNIDHFMADKHQVRTVICEDCGQTCDNIKSLHAHIRQAHSGNFPYKCTECSSVYALQAQFEAHMRKHDMRKPDSFTKEMITLEDLSQQNESILFPMLGQTDSSTTDSTMDDGDDEGVPNLSLEFRCEICPRSFSNAQALTRHKFKKHQQTRKKYFVKGMKNAKCDICNREFSTQSYLQLHIKLHFRKMGYRFKVFDKNRYVTDNQDEEKDADGDEIEKCDKPLEDKELHEKMEEEKSENCDETSEEQESNTQGLKIKINLKNLINSEEPIQNVEQTKSVSEITPMDVDLPSEEIPVTESDSIEVTPEATAPCNQNQDHDSSVEEKEKNEEIEIEESTELKDEGLPHIQLPPVTTELVNGKQQCSFCLKLYRRKHDLKRHLNNIHLKAIQYVCHLCNIPFYEAFQLTRHLRQHNGFVRCGLCLKEYSILRDLKLHISAAHDNSALCQCGTCGQSFEKVRYLREHMHEHDKGIIYKCHLCPEEFKESRDLSRHLVEHSGMYACNICHTTFSAEQELNNHSKCHFDDPGNERKYKCEICPSKFKKKRYLMAHIKKTHASKNRDIVSARLELDCKSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -