Alei101804.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069438.1:39641549-39643249[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 35 7.7 1.2 1 21 130 150 130 151 0.94 2 13 4.2 1e+03 3.1 11.4 1 21 162 182 162 185 0.93 3 13 8.1e-05 0.019 18.0 7.9 1 23 191 213 191 213 0.98 4 13 0.0005 0.12 15.5 10.2 1 23 219 241 219 241 0.99 5 13 0.051 12 9.2 5.5 1 23 247 270 247 270 0.94 6 13 0.00023 0.054 16.6 6.6 1 23 276 298 276 298 0.98 7 13 0.00022 0.052 16.6 8.9 1 23 304 326 304 326 0.98 8 13 2.4e-05 0.0058 19.6 9.2 1 23 332 354 332 354 0.99 9 13 0.0005 0.12 15.5 7.2 1 23 360 383 360 383 0.96 10 13 0.00014 0.034 17.2 2.7 2 23 390 412 389 412 0.96 11 13 0.00014 0.034 17.2 2.7 2 23 419 441 418 441 0.96 12 13 0.00014 0.034 17.2 2.7 2 23 448 470 447 470 0.96 13 13 0.0094 2.2 11.5 4.6 1 23 476 499 476 499 0.97
Sequence Information
- Coding Sequence
- atgggagaaaaaccaacaaaaatttgtcgaatttgttcactagaaatagtagaaacggAGTGGCATCATTTACTGAATAGCAACAATAACTTAATGctgcaatttaaattattgaaccttttaccaaaaattGATCTAAACATCACACCGAACCCAATTGCTTGTAACAGATGTATGattacaattgaagaaatatatgaatttaagcgactgtgtatacaaaccgaaacgactataagaaacttaaaacaaCAAGGTGTAATTAACGAGGAGTTACgtgataaaattcaaataaaactctCAAACCTACAAATAGTCAGCAGTGACCACTTGGAAATAAATACAGATGTGCCTGTATGCATTGAGGAATCTTCAGAAACAGAACggtattattgctacaactgcaatTTCAATACTACCCAAAAGACTGTTTTGATTCGACACTTGACCCGTGAAAATGTAATAGcaactggtgaaaaaccatgtAAATGCCACCTATGTGATTACTCATGTATTACCAAGTGTGATTTAAATTTGCATCTTATGTGTAAGCACACCggtaagaaaacatttaaatgcaatatatgtgatttctGTTGTATCaccaaatctaatttaaaaacgcatatgtttaagcacactggtgaaaaacgatttaaatgcaatatatgtgattactgctgtaccattaaaagtagtttaaaaaagcatatgtgtaagcacactggtgaaaaaccatgtAAATGCCACCTATGTGATTACTCGTGTATTACCAAGCTTGgtttaaaattgcatattatgggtaagcacactggtgaaaaaccatttaaatgcaatatatgtgatttctGCTGTATCACCAAATCtagtttaaaaacgcatatatatagccacactggtgaaaaacgatttaaatgcaatatatgtgattgcTGCTGTACCActaaaggtaatttaaaaagtcatatgtcccagcacactggtgagaaaccatttaaatgcaatatatgtgatttctGTTTTAACaccaaatctaaattaaaaacgcatatgtgtaagcacactggtgaaaaaccatgtAAATGCCACTTATGTGATTACTCATGTATTACCAAGGGTGATTTAAACAGGCATATTAAgagtaagcacactggtgaaaaaccactTAAATGCTACCTATGTGATTACTCATGTATTACCAAGGGTGATTTAAACAGGCATATTaagcgtaagcacactggtgaaaaaccactTAAATGCTACCTATGTGATTACTCATGTATTACCAAGGGTGATTTAAACAGGCATATTaagcgtaagcacactggtgaaaaaccactTAAATGCTACCTATGTGATTACTCATGTATTACCAAGGGTGATTTAAACAGGCATATTaagcgtaagcacactggtgaaaaaccacaTAAATGCTACCTATGTGATTACTCATGTATTGtcaagtttgatttaaaaacgcatattaTGCGTATGCACAccgcagccGATTGGAACACTGGTAAATAA
- Protein Sequence
- MGEKPTKICRICSLEIVETEWHHLLNSNNNLMLQFKLLNLLPKIDLNITPNPIACNRCMITIEEIYEFKRLCIQTETTIRNLKQQGVINEELRDKIQIKLSNLQIVSSDHLEINTDVPVCIEESSETERYYCYNCNFNTTQKTVLIRHLTRENVIATGEKPCKCHLCDYSCITKCDLNLHLMCKHTGKKTFKCNICDFCCITKSNLKTHMFKHTGEKRFKCNICDYCCTIKSSLKKHMCKHTGEKPCKCHLCDYSCITKLGLKLHIMGKHTGEKPFKCNICDFCCITKSSLKTHIYSHTGEKRFKCNICDCCCTTKGNLKSHMSQHTGEKPFKCNICDFCFNTKSKLKTHMCKHTGEKPCKCHLCDYSCITKGDLNRHIKSKHTGEKPLKCYLCDYSCITKGDLNRHIKRKHTGEKPLKCYLCDYSCITKGDLNRHIKRKHTGEKPLKCYLCDYSCITKGDLNRHIKRKHTGEKPHKCYLCDYSCIVKFDLKTHIMRMHTAADWNTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -