Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:104829768-104831307[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.14 33 7.8 6.9 1 23 132 154 132 154 0.98
2 13 2e-05 0.0048 19.9 5.3 1 23 160 182 160 182 0.98
3 13 1.3e-05 0.003 20.5 5.8 1 23 190 212 190 212 0.99
4 13 0.0021 0.5 13.6 2.7 1 23 218 240 218 240 0.99
5 13 6.9e-05 0.016 18.2 2.8 3 23 248 268 246 268 0.98
6 13 1.7e-05 0.0042 20.1 4.4 1 23 274 296 274 296 0.98
7 13 0.0015 0.36 14.0 0.9 1 23 302 324 302 324 0.97
8 13 0.2 47 7.3 8.1 1 20 330 349 330 353 0.94
9 13 8.3e-05 0.02 18.0 6.2 1 23 359 381 359 381 0.99
10 13 0.0096 2.3 11.5 3.8 1 23 387 409 387 409 0.97
11 13 3.7e-05 0.0088 19.1 5.0 1 23 415 437 415 437 0.99
12 13 0.016 3.9 10.8 1.1 1 23 443 465 443 465 0.97
13 13 1.5 3.5e+02 4.6 1.4 2 20 472 490 471 492 0.89

Sequence Information

Coding Sequence
atggCAACGAACATTTGTCGAATCTGTTTACAGAATATAGTGGACACTAAACACTATTACACTCTCGGCAATGACTTAACGTTAAAATCTAAGCTGTTGAATGTCCTGCCAGAAATTGATTTAAATATTACACCACATCCAATTACTTGTATTCGATGTAAGATTACCATTGAGCAAATACATGAATTCAAACAATTGTGCATACAAACTGAAGCAACTGTTAGGAACTTACGACAAACATCTTGCAAGAATGTTTTACCTTATGTTAAAAAAGAGTTGCTTGATAATAGCGTTAAAGTTGAACTCGTAGACCTGCAACTTATGAAAGATGACTGCTTGGAAATTAATACAGATGTGCCTGTATGCATTGAAGAACCTTTAAAACAAGGactgtattattgttttaactgCCACTTTAACTCTGACAAAAAGACACATTTGATTAGACACCTAAAAATACACGATAACATTAGGTCTTTTCAGTGCAACAAGTGCAATTATAGATGTGTGAATAAAAGTAGTTTGAAAAAACACATGACAATTCATATTGACACTGttgaaaaaccgtttaaatgtaatatatgtgattattgcagtaacCGAAAATACAGTTTGAAACTGCATATGAgaaagcacactggtgaaaaaccgtttaaatgcaatatatgtgattattgcagtaatCGAATGCAggttttaaaagtgcatataAATAAACACACTCGTGAAAAATTGTTTGGGTgcgatatatgtgattattcTAGTTACAATAAGTCTACGTTGAAAAAACATATGCATACACACACTGGtgataaaccatttaaatgcaatatatgtgagtATTGCAGTAGCGATaagggaaatttaaaaaaacatatgtataAGCATACTAAtgtaaaaccatttaaatgcagtgtaTGTGATTATTCTAGTAACCAAATGCAGGGTTTGAAAGTGCATATGTATAatcacactggtgaaaaaccatttaaatgcaatctatGTGATTTTTGCAGTAACCATAAGGCGAATTTGAAAGTACATAAAatgtgtaagcacactggtgaaaaaccatttaaatgcaatttatgtaattactgcaGTAAAAAGAAGTCAATGTTGAAAATACATATGCGTAGGCATAccggtgaaaaaccatttaactGTAGTTTTTGCAATTATCGCAATTACGATAAGTCGAAGTTGAAAGTACATATGCGTAGGCACACcggtgaaaaatcatttaaatgcaatatatgtggtTATTGCAGTTACGATAAGACAAAGTTGAAATTACATATGCGTAGACActctggtgaaaaaccattcaaATGCTCTCTTTGTATCGCTAGTTTTACTGAAAGGTATGATTTATCTAGGCAcgaaaaacaacatttaaccAAGCACACTTTAAATTGTGACAAATGCGATTTTAAAACCTTGCGTACATATCATTTGAaacaacatttattattatgtgACAAATCATGA
Protein Sequence
MATNICRICLQNIVDTKHYYTLGNDLTLKSKLLNVLPEIDLNITPHPITCIRCKITIEQIHEFKQLCIQTEATVRNLRQTSCKNVLPYVKKELLDNSVKVELVDLQLMKDDCLEINTDVPVCIEEPLKQGLYYCFNCHFNSDKKTHLIRHLKIHDNIRSFQCNKCNYRCVNKSSLKKHMTIHIDTVEKPFKCNICDYCSNRKYSLKLHMRKHTGEKPFKCNICDYCSNRMQVLKVHINKHTREKLFGCDICDYSSYNKSTLKKHMHTHTGDKPFKCNICEYCSSDKGNLKKHMYKHTNVKPFKCSVCDYSSNQMQGLKVHMYNHTGEKPFKCNLCDFCSNHKANLKVHKMCKHTGEKPFKCNLCNYCSKKKSMLKIHMRRHTGEKPFNCSFCNYRNYDKSKLKVHMRRHTGEKSFKCNICGYCSYDKTKLKLHMRRHSGEKPFKCSLCIASFTERYDLSRHEKQHLTKHTLNCDKCDFKTLRTYHLKQHLLLCDKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-