Alei074896.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:105155375-105174732[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.32 77 6.7 1.9 1 21 129 149 129 150 0.95
2 14 0.39 94 6.4 2.7 1 21 271 291 271 292 0.95
3 14 0.00081 0.19 14.9 9.2 1 23 336 358 336 358 0.98
4 14 0.014 3.4 10.9 7.3 1 23 364 386 364 386 0.98
5 14 6e-05 0.014 18.4 5.9 1 23 392 414 392 414 0.99
6 14 0.0028 0.66 13.2 7.9 1 23 420 442 420 442 0.99
7 14 6e-05 0.014 18.4 5.9 1 23 448 470 448 470 0.99
8 14 0.00077 0.18 14.9 4.0 1 23 476 498 476 498 0.98
9 14 2.3e-06 0.00056 22.8 3.4 1 23 504 526 504 526 0.99
10 14 2.2e-05 0.0054 19.7 4.4 2 23 535 556 534 556 0.96
11 14 0.00043 0.1 15.7 2.5 1 23 590 613 590 613 0.95
12 14 6.1e-05 0.015 18.4 0.5 1 23 620 642 620 642 0.99
13 14 0.00058 0.14 15.3 2.0 1 23 648 670 648 670 0.99
14 14 0.017 4.1 10.7 4.6 1 23 676 698 676 698 0.98

Sequence Information

Coding Sequence
ATGGacataaatacaacaaaagcttgtcgaatttgtttagaAGAGATAGTGGAAactgagcagtattactttcttAACAACGACAATGTTATACAATCTAAGTTGCTGGACGTTCTACCAGAAATTGACTTAAATATTACGTCAAACCCGATTACTTGTAATCAATGTATGATCACAAttgaagaaatacaaaaattcaaacaacTGTGCATACAAACTGAAACTGCTATAAGGAACTTAAGACAACAAGGAATAATTAAAGAGGAGTTGCTTGACGTTGACATTAAAGTCGAACTTTCAGACTTAAAAATTGTCAGTGATGACATCTTGGAAATCAATACGGATATGCCTGTATGCATTGAAAAACCTTTATTAACAGAactgtattattgctacaactgtgACTTTAACACTAACGAGAAGAAGGATTTGATTCATCATTTGAATTATTCAAATCTGAAAGGCCATAAGTTGGAAACTGAGCAGTATTATTTTCTGGACGACAATGATTTAAAGCTACAATCTAAGTTGCTCAACGTTTTACCAGAAATTGACTTAAATATTATATCAAACCCGATTACTTGTAACTCATGTATGATCACAATTGAAGAAATACACAAATTCAAGCAATTGTGCATACAAACTGAAATCACTATGAGGAATTTACGACAACATGGAATAATTAAAGCGGAGTTGCTTGACAATAAGATTAAAGTCGAACCTTTAGACTTACAAATTGTCAATAATGATACCTTGGAAATCAATATGGATATGTCTGTATGCTTCGAAAAACCTTCATTAACAGAACTGTATTATTGCTACAGCTGTGACTTTAACactaacaagaaaaataatttgattcatcATTTGAATTATACAAGTCGGAAAGGGGATAACTGTAAACACATAAATCAAAAGTCTCACAATTGTGAtaagtgtaattttaaaactttttacaaacattcattgacacatcacaaaaaaaagcacactggtgaaaaaccttttaaatgcaataattgtgattactgctgtattaacaagtcagatttaaaaatgcatatgcataagcacacaggtgcaaaaccatttaaatgcaatgtatgtgattactgcagtactacAATGTGGCATTTAAAAGTGCATGTGTGTAAGCATAcaggtgaaaaaccatttaaatgtaatgtgtgtgattattgcagtaccTCAGTGTCTCATTTAAAACGGCATATGCTTAGACACACCggtgcaaaaccatttaaatgcaatgtatgtgattactgcagtactacAATGTGgcatttaaaagtgcatatgtgTAAGCATAcaggtgaaaaaccatttaaatgcaatgtgtgtgattattgcagtaccTCAGTGTCTCATTTAAAACGGCATATGCTTagacacactggtgaaaaactatttaaatgcaatatatgtaattactccGGCGCCACAATGCCGCATTTAAAACGGCATATGCAtaggcacactggtgaaaaaccatttaaatgcaatatatgtgattactgcagtatcaACAAGTCAGATTTGAAAATACACatgcgtaagcatactggtgaaaaaccatttgaATGCActTGTCATGATTGTGGTTATAAGTCCAATCAAAAATCTAATTTGATCCGTCATGTCAGGATCCATCAAAAACCAAAATGGTTAATTCGTGAAGTTCGCAGTTTTTCTACTCAACAACTGCCAGATTTAAAGATACATACGGAGCAACACATTGATATAAAGGATTTCAAATGTGACAAGTGCACATTCTCGACTACAACAAAAGCGTATTTAAAGAGACACATAGATTACATGCACAACATAGAGCTTAAAAAGTACAAATGCGATATATGTGATTACGCATCCACAcagaaaagatttttaattatgcacATTCGTATTCACACTGGAGAAAAACCGTATAAGTGCAATACATGCGATTACCGCAGCAAGCAAATTGGATATTTAAAGATGCATATGCTTAAGCACACTGGCGAGAAACCTTTCAGTTGCAATAGTTGcagttataaaacttataacaaGTATTCGTTGAAGACTCATGAAAGGAAGCACCTTTGGGAAGCACAGTGTTGA
Protein Sequence
MDINTTKACRICLEEIVETEQYYFLNNDNVIQSKLLDVLPEIDLNITSNPITCNQCMITIEEIQKFKQLCIQTETAIRNLRQQGIIKEELLDVDIKVELSDLKIVSDDILEINTDMPVCIEKPLLTELYYCYNCDFNTNEKKDLIHHLNYSNLKGHKLETEQYYFLDDNDLKLQSKLLNVLPEIDLNIISNPITCNSCMITIEEIHKFKQLCIQTEITMRNLRQHGIIKAELLDNKIKVEPLDLQIVNNDTLEINMDMSVCFEKPSLTELYYCYSCDFNTNKKNNLIHHLNYTSRKGDNCKHINQKSHNCDKCNFKTFYKHSLTHHKKKHTGEKPFKCNNCDYCCINKSDLKMHMHKHTGAKPFKCNVCDYCSTTMWHLKVHVCKHTGEKPFKCNVCDYCSTSVSHLKRHMLRHTGAKPFKCNVCDYCSTTMWHLKVHMCKHTGEKPFKCNVCDYCSTSVSHLKRHMLRHTGEKLFKCNICNYSGATMPHLKRHMHRHTGEKPFKCNICDYCSINKSDLKIHMRKHTGEKPFECTCHDCGYKSNQKSNLIRHVRIHQKPKWLIREVRSFSTQQLPDLKIHTEQHIDIKDFKCDKCTFSTTTKAYLKRHIDYMHNIELKKYKCDICDYASTQKRFLIMHIRIHTGEKPYKCNTCDYRSKQIGYLKMHMLKHTGEKPFSCNSCSYKTYNKYSLKTHERKHLWEAQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-