Alei074620.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:103452313-103453955[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 4.2 1e+03 3.2 3.7 2 23 142 163 141 163 0.95
2 13 1.1e-05 0.0027 20.7 4.6 1 23 193 215 193 215 0.99
3 13 0.017 4 10.7 0.5 1 20 221 240 221 243 0.92
4 13 6.7e-05 0.016 18.2 7.3 1 23 249 271 249 271 0.98
5 13 1.6e-05 0.0037 20.3 6.4 1 23 277 299 277 299 0.99
6 13 9.1e-05 0.022 17.8 4.2 1 23 305 327 305 327 0.98
7 13 9.1e-05 0.022 17.8 4.2 1 23 333 355 333 355 0.98
8 13 9.7e-05 0.023 17.7 6.2 1 23 361 383 361 383 0.99
9 13 0.00067 0.16 15.1 9.6 1 23 389 411 389 411 0.99
10 13 1.7e-05 0.004 20.1 3.4 1 23 417 439 417 439 0.98
11 13 8.7e-06 0.0021 21.0 6.5 1 23 445 467 445 467 0.99
12 13 0.00032 0.078 16.1 5.5 1 23 473 495 473 495 0.99
13 13 0.13 30 7.9 6.5 1 23 501 523 501 523 0.96

Sequence Information

Coding Sequence
ATGtgtgaaaagaaaataaaggcCTGTCGAATTTGTTTAGAGGAAATAGTGGAAaccgagcagtattactttTTCAATGATGGCAATAACCTAAAGCTACAATCTAAGCTGCTGGAGGTTTTACCAGAAATTGACTTAAACATCACCTCAAACCCGATTTCTTGTATTCGATGTGTGGTTACAAtggaagaaatatatgaattcaAGCAACTGTGCATTCTAACTGAAACAACTGTAAAAGAATCACGACAAATACCTTACACCGATGTCTcaacttatattaaaaatgaaactatCAAAAACGAGTTGGTTGATAATAACATTCAAGTCAAACTTTCAGATTTGGAAGTCATCAGCGATGACTACTTGGAAATCAAGACCAATGTGTCTGTCTGCGTCAAGGAACCTTCAAAAATAGAACTgtattgctacaactgcaactTCAAGACTAACAAGAAGGTGATTTTAATTCGACATATGCATAAGCACCTAAATGAGAAAAGTTATAATTGCAATGAGggcaattataaaactttatcaacaaattacaaaagaaaacacaCCACTAAAAgatcatttaaatgcaacataTGTAATTACTTTACTATTTACAGATCACATTTAAAAGttcatatgcgtacgcacactggtgaaaaaccatttaaatgcagtatatgtgattaccgCAGTATTTCCATGTCGGGTATAAAAAGGCATATGcctaagcacactggtgagaaaccatttaaatgcaatatatgtaattactgctCTAATGACAAATCGAATTTAAAAAgtcatatgcataagcacaccggtgaaaaatcatttaagtGCAACATATGCGATTACTGCAGTAGTAGCAcatcacatttaaaaattcatatgcgtaagcacagtggtgaaaaaccatttaaatgcaatatatgtaattacagCACTATTAACATGTCACATTTAAAAACTCATATGTAtaggcacactggtgaaaaaccatttaaatgcaatatatgtaattacagCACTATTAACATGTCACATTTAAAAACTCATATGTAtaggcacactggtgaaaaaccatttaaatgcaatatatgtgattacagcACTATTACCATGTCACATTTAAAAActcatatgtgtaagcacactggtgagaaaccatttaaatgcaatatgtgtgatCACTGCACAACTAACATGTcggatttaaaaaggcatatgtgtaagcacactaatgaaaaacgatttaaatgcagtatatgtgattattgtagCAGCCGATTAGGAAGTTTAAGAACGCATATGCGtcagcatactggtgaaaaaccgtttaaatgcaatatatgtaattactgctGTAATGAcaaatcgaatttaaaaattcatatgcttaagcacaccggtgaaaaaccatttaagtgcagtatatgtgattactgctgtattgccaagcaaagtttaaaaatacatatgcgtaagcacactggtgaaaaaccattcaaATGCATTATATGCGATTACTGCTGTACAACCAAGTTTGGTTTAAAAAAGCATAGCattaagcacactggtgaaaaaccaacCACTTAA
Protein Sequence
MCEKKIKACRICLEEIVETEQYYFFNDGNNLKLQSKLLEVLPEIDLNITSNPISCIRCVVTMEEIYEFKQLCILTETTVKESRQIPYTDVSTYIKNETIKNELVDNNIQVKLSDLEVISDDYLEIKTNVSVCVKEPSKIELYCYNCNFKTNKKVILIRHMHKHLNEKSYNCNEGNYKTLSTNYKRKHTTKRSFKCNICNYFTIYRSHLKVHMRTHTGEKPFKCSICDYRSISMSGIKRHMPKHTGEKPFKCNICNYCSNDKSNLKSHMHKHTGEKSFKCNICDYCSSSTSHLKIHMRKHSGEKPFKCNICNYSTINMSHLKTHMYRHTGEKPFKCNICNYSTINMSHLKTHMYRHTGEKPFKCNICDYSTITMSHLKTHMCKHTGEKPFKCNMCDHCTTNMSDLKRHMCKHTNEKRFKCSICDYCSSRLGSLRTHMRQHTGEKPFKCNICNYCCNDKSNLKIHMLKHTGEKPFKCSICDYCCIAKQSLKIHMRKHTGEKPFKCIICDYCCTTKFGLKKHSIKHTGEKPTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-