Alei054535.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069434.1:20952827-20954390[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.044 10 9.4 2.3 1 20 128 147 128 149 0.95
2 13 0.88 2.1e+02 5.3 0.6 11 23 169 181 167 181 0.92
3 13 0.00067 0.16 15.1 6.8 1 23 187 209 187 209 0.99
4 13 2.1e-05 0.0051 19.8 4.6 1 23 215 237 215 237 0.99
5 13 0.00017 0.042 16.9 6.6 1 23 243 265 243 265 0.99
6 13 9.1e-05 0.022 17.8 1.7 1 23 271 293 271 293 0.99
7 13 0.00019 0.046 16.8 0.9 1 23 299 321 299 321 0.99
8 13 0.016 3.7 10.8 7.9 1 23 327 349 327 349 0.99
9 13 3.1e-06 0.00074 22.5 2.6 1 23 355 377 355 377 0.99
10 13 1.4e-06 0.00034 23.5 7.1 1 23 382 404 382 404 0.99
11 13 0.012 3 11.1 3.6 1 23 410 432 410 432 0.98
12 13 8.5e-05 0.02 17.9 3.6 1 23 438 460 438 460 0.99
13 13 4.3e-06 0.001 22.0 4.6 1 23 466 488 466 488 0.99

Sequence Information

Coding Sequence
ATGagtgaaaaaacaattatttgtcgaatttgtttgatAGAAATAGTGGAAATcgagcagtattactttcttGACAATGAGTTAAAGCTGCAATCCAAGTTGTTGGACTTACtaccagaaattGATTTAAACATTACAACAAATCCAATTGCTTGTAACAGATGTATAACTACAGTTGAcgaaatttatgaatttaagcaactgtgcATACAAACTGAATCGATTATAAGGAACTTACGACAACAAGGAGCAATTAAAGAGGAGTTATTTGATAATGGCACTAAAGTTGAACTTTCAGACTTACAGATCATCAGCAATGACTGCTTGGAAATTAATACTGATGTCCCTGTATACATTGAAGAACCTTCAAAAACAGAACTGTATTATTGCCACAACTGTGActttaacactaataaaaagaCCAGTTTGATTCAACACTTGATTCACAGAAACCTAAAAGCACATATATGCAAGGATGCCATTGAGAAACCTTACAATTTCGTTTCCAACAAAACTTTGTTGACAAAACACCAGAAAAAACACACCgatgaaaaacaatttaaatgcagtatatgtgattattgcagtaacCGAATGGATCAATTGAAATCTCATATGtgtaagcatactggtgaaaaaccatttaaatgcaatatatgtgattactgtagtatttacaagtcgaatttaaaaacacatgtgCGTAAGCACAAtaatgaaaaaccatttaaatgtaatatatgtgattattgcagtaatAGACTGGATCAATTAAAATCTCATATGtgtaagcatactggtgaaaaaccatttaaatgcaatgtatgtgattataGCAGTATCTACAGGTGgactttaaaaacacatatgcagAAGCACGCTGCTGAAAattcatttaaatgcaatatatgtgaatATAGCAGTAACGGAATGGATCAATTGAAATCTCATATTCGTAAGCACACtaatgaaaaaccatttaaatgcagtatatgtaattattgtaGTACCAGAATGGATCAATTGAAATGtcatatgcgtaaacacactaatgaaaaattatttaaatgtaatatatgtgattattgcagtatcTATAATGCgaatttaaaagcacatatgcgtaagcacactgaaACACTattcaaatgcaatatatgtgattactgcagtactcACAACtcgaatttaaaaacacatatgcgtacgcacactaatgaaaaaccatttaaatgcgatatatgtgattattgcagtaacCGAGTAGATCAATTGAAATTTCATATGTCTAAGCACACcggtgaaaaatcatttaaatgcaaaatatgtgattattgcagtatcCGAATGGATCAATTGAAATCTCATATGCTTAAGCACACtaatgaaaaatcatttaaatgtaatatatgtgattattgtagtATCTATAATTCGAACCTAAAAACACACATGCGTAAGCAcactaaaaaagtaaactatgtaaaaaaattaaaaatatttaaaggcaTGTGA
Protein Sequence
MSEKTIICRICLIEIVEIEQYYFLDNELKLQSKLLDLLPEIDLNITTNPIACNRCITTVDEIYEFKQLCIQTESIIRNLRQQGAIKEELFDNGTKVELSDLQIISNDCLEINTDVPVYIEEPSKTELYYCHNCDFNTNKKTSLIQHLIHRNLKAHICKDAIEKPYNFVSNKTLLTKHQKKHTDEKQFKCSICDYCSNRMDQLKSHMCKHTGEKPFKCNICDYCSIYKSNLKTHVRKHNNEKPFKCNICDYCSNRLDQLKSHMCKHTGEKPFKCNVCDYSSIYRWTLKTHMQKHAAENSFKCNICEYSSNGMDQLKSHIRKHTNEKPFKCSICNYCSTRMDQLKCHMRKHTNEKLFKCNICDYCSIYNANLKAHMRKHTETLFKCNICDYCSTHNSNLKTHMRTHTNEKPFKCDICDYCSNRVDQLKFHMSKHTGEKSFKCKICDYCSIRMDQLKSHMLKHTNEKSFKCNICDYCSIYNSNLKTHMRKHTKKVNYVKKLKIFKGM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00153845;
90% Identity
iTF_00153845;
80% Identity
-