Basic Information

Insect: Aquatica leii
Gene Symbol: -
Assembly: GCA_035610365.1
Location: CM069438.1:9073486-9074745[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00047 0.11 15.6 1.4 1 23 30 52 30 52 0.95

2 10 0.0027 0.64 13.2 7.0 1 23 58 81 58 81 0.95

3 10 8.8e-05 0.021 17.9 3.5 1 23 87 109 87 109 0.96

4 10 0.00014 0.033 17.3 2.0 2 23 116 138 115 138 0.94

5 10 1.6e-05 0.0038 20.2 0.4 1 23 143 165 143 165 0.99

6 10 1.5e-07 3.5e-05 26.6 3.5 1 23 175 197 175 197 0.99

7 10 6.7e-05 0.016 18.3 0.0 2 23 203 224 202 224 0.95

8 10 4.1e-06 0.00097 22.1 2.4 1 23 230 252 230 252 0.98

9 10 1.8e-06 0.00044 23.2 2.1 3 23 260 280 258 280 0.97

10 10 0.0025 0.6 13.3 1.4 1 23 286 309 286 309 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00047	0.11	15.6	1.4	1	23	30	52	30	52	0.95
2	10	0.0027	0.64	13.2	7.0	1	23	58	81	58	81	0.95
3	10	8.8e-05	0.021	17.9	3.5	1	23	87	109	87	109	0.96
4	10	0.00014	0.033	17.3	2.0	2	23	116	138	115	138	0.94
5	10	1.6e-05	0.0038	20.2	0.4	1	23	143	165	143	165	0.99
6	10	1.5e-07	3.5e-05	26.6	3.5	1	23	175	197	175	197	0.99
7	10	6.7e-05	0.016	18.3	0.0	2	23	203	224	202	224	0.95
8	10	4.1e-06	0.00097	22.1	2.4	1	23	230	252	230	252	0.98
9	10	1.8e-06	0.00044	23.2	2.1	3	23	260	280	258	280	0.97
10	10	0.0025	0.6	13.3	1.4	1	23	286	309	286	309	0.97

Sequence Information

Coding Sequence: ATGTGGAGAGCAGATGGTTTAGTTGATAAGGCTGAGGAAAGTTTgacgaCACTAGCACGACTACCAGCGATCGATTTGCAATTTGAGCACCAATGCGacgtttgcttaaaaatttttccCGAAAGAAAGAATCTGAGAAAACACAAAGTCGTCCACGACGACAGCAAACGGCACGAGTGTAACGTATGTCTGAAGCGGTTTAAGCGTAAATGCAGTCTTAACGTTCACACGAAACAATTTCATCAACCTAGACAGGTTTATAAGTGTGATGTGTGTAATAAGATTTACGCATCGGAACATAGTTTGAAGCGTCATCAAGTTCATCATACAAACGAATTTATGGTATATTGTTCTACGTGCGATAAAGGATTTTACAGAAAATGCTATCTGACACAACATATTTTGAACGTGCACGAAAAAACCTTGTATGTTTGCCAAATTTGCGAAAAACCGATTTcctcaaaattttctttgaagAGTCACATGGAAACTCACAATGGCAATAATTTgccaattaaaaagtttaagtgtACTATATGTGACAAGGCTTTTCGAACTAAGCGTTTTTTAAACCGCCATCTTAAAACGCATACTGAAGAAAAGTGGATCTGTGACGTTTGTGGAAAATCTGTCTCAACCAAAGTGAGTTTAGCTGAACACATCCTACTACACACTGAAGTAAAACCTCATGAATGTCAATTTTGCAAAAAGAGCTTTGCGGTTGCTCGTAATCTCAAAGTCCATCTACGTACTCATTCTGGCGCAAAACCATACGGTTGTGAAGTTTGTAAGAAAACTTTTACTCAACGTTCTAGTTTGGTTATTCATATGCGACATCACACCGGAGAAAAACCTTATAAATGTGATTTGTGTGAAGACTCTTTTGTGAGCAAGAATTTGTTAAACATGCATAAGAAAAGCAAACATTTTATCATACCATAA
Protein Sequence: MWRADGLVDKAEESLTTLARLPAIDLQFEHQCDVCLKIFPERKNLRKHKVVHDDSKRHECNVCLKRFKRKCSLNVHTKQFHQPRQVYKCDVCNKIYASEHSLKRHQVHHTNEFMVYCSTCDKGFYRKCYLTQHILNVHEKTLYVCQICEKPISSKFSLKSHMETHNGNNLPIKKFKCTICDKAFRTKRFLNRHLKTHTEEKWICDVCGKSVSTKVSLAEHILLHTEVKPHECQFCKKSFAVARNLKVHLRTHSGAKPYGCEVCKKTFTQRSSLVIHMRHHTGEKPYKCDLCEDSFVSKNLLNMHKKSKHFIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -