Alei029338.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:271073355-271075662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.08 19 8.6 1.1 2 23 128 151 127 151 0.96 2 14 0.0002 0.048 16.8 0.2 1 23 157 179 157 179 0.98 3 14 0.95 2.3e+02 5.2 1.9 11 23 195 207 193 207 0.94 4 14 3.1e-05 0.0074 19.3 3.4 1 23 213 235 213 235 0.98 5 14 2.4e-05 0.0058 19.6 0.8 1 23 241 263 241 263 0.98 6 14 0.0043 1 12.6 3.6 1 23 269 291 269 291 0.98 7 14 0.00033 0.079 16.1 5.3 1 23 297 319 297 319 0.98 8 14 0.0017 0.41 13.8 4.7 2 23 326 347 325 347 0.97 9 14 0.00055 0.13 15.4 4.3 1 23 353 375 353 375 0.97 10 14 0.0001 0.025 17.7 0.4 1 23 382 404 382 404 0.96 11 14 0.0015 0.37 14.0 1.8 1 23 409 431 409 431 0.98 12 14 8.6e-06 0.0021 21.1 2.6 1 23 437 459 437 459 0.99 13 14 4.3e-05 0.01 18.8 1.1 1 23 465 487 465 487 0.98 14 14 2.1e-05 0.005 19.9 0.8 1 23 493 515 493 515 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAAAGACATTCGCCTGTCGTATTTGTTTACAAGAAATTATAGAAACGGAACAGTATTACTTTCTAAACAACAGCTATGATTTAGAGCTACAATTGAAATTGTTAGAGTTGTTGCCAGAAATTGACTTAAGTATCACACCTAACCCAATTATTTGTGACCGTTGCAAGATAACAATTGAAGAATTACACGAATTCAAACAACTGTGCCTGCAAACCGAAACCACCGTAAGGGACTTACCAGGATCGATACCGGTTTTAActtatgttaaaaaagaaatcattaAAGAAGAGTTGATCGATGATAATATTACAATTGAACTTTTAGATTTACAAATTGTCAAAGAGAACTGCTTGGATATGTCTGCATGTATCAAGAAATGTAAATTTGATCAATGTGGTTTTAAAAGTGCAGATAAAAGTGTTTTTGATAGACACATAATGACTCACAGCTCGGAAAAACTGTTTGTTTGTGGAATTTGTGGCTTCTCTACTCGCCGAAAGTGGGATATAAGGAGTCACATGCTAATTCATAGTTCGGTAAAACCGTCTGATtctggaacttatggtttttcTAACTCACATAAATCTGATTTAAACTCACACATGCTGACTCATAACTCAGTAAAAACGTTTGTTTGCGAAACTTGCGGTTTTTCTACGCAACATAAGTCAACTTTAAAGAGACACATGTTAACTCATAGTTCAataaaaccgtttgtttgtgAAATTTGTGGGTACTCTACAACATATAAATCTGGTTTCAAGTATCATATACTAACTCATAGCTCAGTAAAACCATTTGTTTGCAAAACTTGTGGCTTTTCTACACAACATAAATCGGGTTTTAAGTCACACTTGCTGTCTCATAGCGcggtaaaaccgtttgtttgtgaaacttgtggTTATTCTACGCAACACAAATCGTGTTTAAAGTCACACATGCTGACTCATAGCACATTAAAACCATTAGTTTGCGAAACTTGTGATTATTCTACACAACATAAATCGTGTTTAAAGTCACACATGCTAACTCATAGCTCGGTGAAACCGTTTGTTTGCGAGACTTGTGGGTTTTCTACACATCATAAGTCAACTTTAAAGAAACACATGGTGATTCATAATAGTTCGGTAAGACCATTTGTTTGTGCAACTTGTGGTTTTTCTACGCCCCGTAAATCGAGTTTAAAATCGCACATGGTGCTTCATAGCTCGGTAAAATTTGTTTGCGAAACTTGTGGTTTTTCTACGCTACATAAATCGGGTTTAAAGTCGCATATGCTGACTCATAGCTCAGTAAAACCATATGTTTGCAATATTTGTGGGTTGTCTATTCGACATAAGTCAGCTTTAAGGCAACACATGCATACTCATAGTTTggtaaaaccgtttgtttgcaAAACTTGTGGTTATTCTACGCAATATAAATCGGGTTTAAAGTCGCACATGCAAATTCATAGCTTGGTAAAACCATATGTTTGCAATAGTTGTGGGTTGTCTATTCGACATAAGTCAGCTTTAAATAAACACATGTTGATTCATTGCTTgCTCGAGGTGAACAAAAACACCGGTTCGCAATGGTGGGCTGTAGGAATCGAATCGGGGATGACGGACGAATTCTGCGATCATCGGGATGTCGAGTTTTTGGTGGATCCGGTCTGTTCGGAAGAACCAGGGGGCGTCTGCGATCATTCTGAGCATCTTATTTTATAA
- Protein Sequence
- MDEKTFACRICLQEIIETEQYYFLNNSYDLELQLKLLELLPEIDLSITPNPIICDRCKITIEELHEFKQLCLQTETTVRDLPGSIPVLTYVKKEIIKEELIDDNITIELLDLQIVKENCLDMSACIKKCKFDQCGFKSADKSVFDRHIMTHSSEKLFVCGICGFSTRRKWDIRSHMLIHSSVKPSDSGTYGFSNSHKSDLNSHMLTHNSVKTFVCETCGFSTQHKSTLKRHMLTHSSIKPFVCEICGYSTTYKSGFKYHILTHSSVKPFVCKTCGFSTQHKSGFKSHLLSHSAVKPFVCETCGYSTQHKSCLKSHMLTHSTLKPLVCETCDYSTQHKSCLKSHMLTHSSVKPFVCETCGFSTHHKSTLKKHMVIHNSSVRPFVCATCGFSTPRKSSLKSHMVLHSSVKFVCETCGFSTLHKSGLKSHMLTHSSVKPYVCNICGLSIRHKSALRQHMHTHSLVKPFVCKTCGYSTQYKSGLKSHMQIHSLVKPYVCNSCGLSIRHKSALNKHMLIHCLLEVNKNTGSQWWAVGIESGMTDEFCDHRDVEFLVDPVCSEEPGGVCDHSEHLIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -