Basic Information

Insect: Aquatica leii
Gene Symbol: -
Assembly: GCA_035610365.1
Location: CM069438.1:9992676-9993821[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0051 1.2 12.3 3.3 1 23 117 139 117 139 0.95

2 9 0.00047 0.11 15.6 0.1 1 23 145 167 145 167 0.97

3 9 4.1e-06 0.00099 22.1 0.5 1 23 173 195 173 195 0.97

4 9 6.4e-08 1.5e-05 27.8 0.5 1 23 201 223 201 223 0.99

5 9 6.2e-05 0.015 18.4 2.8 1 23 229 251 229 251 0.98

6 9 6.1e-07 0.00014 24.7 3.0 1 23 257 279 257 279 0.98

7 9 8.6e-07 0.00021 24.2 0.4 1 23 285 307 285 307 0.98

8 9 2.4e-06 0.00057 22.8 3.5 1 23 313 335 313 335 0.97

9 9 6.4e-06 0.0015 21.5 3.1 1 23 341 363 341 363 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0051	1.2	12.3	3.3	1	23	117	139	117	139	0.95
2	9	0.00047	0.11	15.6	0.1	1	23	145	167	145	167	0.97
3	9	4.1e-06	0.00099	22.1	0.5	1	23	173	195	173	195	0.97
4	9	6.4e-08	1.5e-05	27.8	0.5	1	23	201	223	201	223	0.99
5	9	6.2e-05	0.015	18.4	2.8	1	23	229	251	229	251	0.98
6	9	6.1e-07	0.00014	24.7	3.0	1	23	257	279	257	279	0.98
7	9	8.6e-07	0.00021	24.2	0.4	1	23	285	307	285	307	0.98
8	9	2.4e-06	0.00057	22.8	3.5	1	23	313	335	313	335	0.97
9	9	6.4e-06	0.0015	21.5	3.1	1	23	341	363	341	363	0.98

Sequence Information

Coding Sequence: atGGCTTTAATTAATCTATGCCgaatttgtttgtttcaaaaCGTACAACTAAAGAATATCTTCGGCAAGAATGAAAACGacaaagaaatatcaaagctGATATCGAGCTTTGTCGAAATCAAGGTTGTAGAAGGTGATGGGCTTCCAAGTACAATCTGCACAACATGTTACGATAAGTTATTGGCAGCAATAGACTTGCAGCAACAAATCACAACATCAGATGCATTATTGCGCAAAGAACTTGTTAAAACTGAGGCTAAAGAAGAAATTACTCGAGATGAAGACATTAGCGGAACCGAGTCTAATTGTAGTAACGACGACAATCAAAAGGAATTGAATAAAAATCAGTATTATTGTGTAGAATGTAATAAGCAGTTTAAAAACCGTTATCGTTTCGAAGTGCACAATACAAAACACACAGGTGCAATGCCATTCATATGTGCGGTATGCAACAAAGGTTTCTCGATGCGTTGGgttttgaatttacatttaaGAGTTCATACCAGTGTGAAACCGCATTCGTGCAAAGTCTGTGGCAAGGCATTTAAATATGCCAGCGCACTACCTAGTCATATGAGAATACATACAGGTGTGCGTCCGTATAAGTGTGATGTGTGTGATAAAACGTTTACTCAAATGGGCGGATTAAAAGCACATTTACGAACACACACAGGGGAGAAACCGTTTATCTGTGAGATTTGCAGTAAGTGTTTCGGCGAATACACCAGTTTAAAAAGACACGTCAAGACGCATCgtagtgaaaaaaattttcCATGCCCGACTTGTGGTAAATGCTACAATGATCCTTCTAGTGTTCACCGACATATGAAAACACACACAGGCGAAAAGCCATATTCTTGTGACATTTGTGATAAGAAGTTTAGTGCTCGAGGTTCCTTAAAAATGCACATTAGGATACACGAGGGTGTTAAGCCACACTCTTGTAAAATATGTGGTAAAAGTTTCACGCAGGCTAATTGCGTTGTCAGACACATGCGGATACATTCTGGAGAAACTCCATATCCTTGTAAGTTATGTCCAAGGAGGTTTGCTTATTCGCATCACTTAGTTAACCATATGAAAGTTCatcaacagtaa
Protein Sequence: MALINLCRICLFQNVQLKNIFGKNENDKEISKLISSFVEIKVVEGDGLPSTICTTCYDKLLAAIDLQQQITTSDALLRKELVKTEAKEEITRDEDISGTESNCSNDDNQKELNKNQYYCVECNKQFKNRYRFEVHNTKHTGAMPFICAVCNKGFSMRWVLNLHLRVHTSVKPHSCKVCGKAFKYASALPSHMRIHTGVRPYKCDVCDKTFTQMGGLKAHLRTHTGEKPFICEICSKCFGEYTSLKRHVKTHRSEKNFPCPTCGKCYNDPSSVHRHMKTHTGEKPYSCDICDKKFSARGSLKMHIRIHEGVKPHSCKICGKSFTQANCVVRHMRIHSGETPYPCKLCPRRFAYSHHLVNHMKVHQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00151849;
90% Identity: -
80% Identity: -