Alei075924.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069435.1:110884598-110886029[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.041 17.0 4.0 1 23 133 155 133 155 0.98 2 12 0.00056 0.14 15.3 7.6 1 23 161 183 161 183 0.99 3 12 0.00039 0.092 15.9 4.3 1 23 189 211 189 211 0.98 4 12 8.2e-06 0.002 21.1 2.5 1 23 215 237 215 237 0.99 5 12 0.095 23 8.3 1.8 1 23 243 265 243 265 0.94 6 12 0.0016 0.39 13.9 4.6 1 23 269 291 269 291 0.98 7 12 0.00036 0.086 16.0 1.1 1 23 297 319 297 319 0.98 8 12 1.6e-06 0.00039 23.3 0.9 1 23 325 347 325 347 0.98 9 12 0.00068 0.16 15.1 0.8 2 23 354 375 353 375 0.96 10 12 6.9e-07 0.00017 24.5 1.1 1 23 381 403 381 403 0.98 11 12 4e-05 0.0095 19.0 0.1 1 23 409 431 409 431 0.98 12 12 2.2e-07 5.3e-05 26.1 2.5 1 23 437 459 437 459 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAATTCGAAGAAACAGTTGTCGAActtgcttacaaaagataatagAAACTGAACAGTATTATTTCCTTAAcgacaataaattaaagttacaaTCTAAGTTGCTGGACTTTTTGCCAGAAATTGACTTGAATATCACACCTAATCCAATAATGTGTAAGGAATGTATGATCATGATTGgtaaaatatatgaatttaagcgACTATGCATGCAAACTGAAATCACGATAAAAAACTTACAGCAACAAATACCTTTAGACAATGTTCCAACGTGCATTAAAACAGAAATGATCGAGGAAGAGTTTATTGATAACATCAAAGTCGAACTTCCAGACTTGCAAATACGCAATGATACAAATGTATCTGTATGCATCAACGAAGCTTCAGAAACTTATTATTGTCACAACTGTGACTTCAACACCAATAACAAGAAGAATTTGGTACAACATATGAAAGTGCACAACAACACTCGTAGTTTTCAGTGCAACGTGTGCAACTATTGTTGTAAAAAGAAGTCTTTATTTGAGGTGCATTTGCGAAAACACACTGGGGAGAAGCCATTTAAATGTTCCGAGTGTAATTTCAAATCAGCACGAAAGACTAACCTACGACGTCATCATTTAATACACTGCAGGTTATACCAGTGTCATGATTGTGATTATAGCACTAATCGAAAAGGCAATTTGATATATCATGCTAAGACTCATCGAACTGTAAAAGAATTTGATTGTAAACCGTGTAATTATTCTACTCTATCTAAGGACTTGTTTAAACGTCATATGCGACTACATGATGCAGTGTATAAATGTCATCAATGTGATTTTCAAAGTTcgtataaaaaaagtttgaagaatCACTTGTTAATTCACAATTTGATAAAGCcatttgtttgtgaaacttgtggATTTTCAACACGATATGAGACCAGTTTCAAGATACATATGATGAGTCATGGCCCAGTAAAACCATTTGTTTGTGGAACTTGTGGGTATTCTACTCAACGTCagtctaatttaaaaaaccacatGAAGATTCATAGCTCAGTGAAACCGCttgtttgtgaaacttgtgggttTTTAACTCGACGCAAGACTGATTTGAAGAAACACATGGTCAGTCACAGCTCAGTAAAGccgtttgtttgtaaaatttgtgaatTTTCTACTCGACGTCCATACAATTTAAAGAACCACATGAGAATTCACAGCTCGGTGAAACCgtttgtttgtgaaacttgtgggttTTCTGCTAGACGTCAATGGGATTTAAAGGAACATATGATGATTCACAGCTCTGAAAAaccatttgtttgtaaaatctGTGGGTACTCTGTTCGACGTCAGTATCATCTAACTAAACATATGATCACTCACACTTGA
- Protein Sequence
- MDEIRRNSCRTCLQKIIETEQYYFLNDNKLKLQSKLLDFLPEIDLNITPNPIMCKECMIMIGKIYEFKRLCMQTEITIKNLQQQIPLDNVPTCIKTEMIEEEFIDNIKVELPDLQIRNDTNVSVCINEASETYYCHNCDFNTNNKKNLVQHMKVHNNTRSFQCNVCNYCCKKKSLFEVHLRKHTGEKPFKCSECNFKSARKTNLRRHHLIHCRLYQCHDCDYSTNRKGNLIYHAKTHRTVKEFDCKPCNYSTLSKDLFKRHMRLHDAVYKCHQCDFQSSYKKSLKNHLLIHNLIKPFVCETCGFSTRYETSFKIHMMSHGPVKPFVCGTCGYSTQRQSNLKNHMKIHSSVKPLVCETCGFLTRRKTDLKKHMVSHSSVKPFVCKICEFSTRRPYNLKNHMRIHSSVKPFVCETCGFSARRQWDLKEHMMIHSSEKPFVCKICGYSVRRQYHLTKHMITHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -