Alei075562.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:108941156-108943166[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00086 0.21 14.8 4.3 1 23 137 159 137 159 0.98
2 17 0.00084 0.2 14.8 4.3 1 23 165 187 165 187 0.99
3 17 0.054 13 9.1 2.2 1 23 218 240 218 240 0.98
4 17 0.034 8.1 9.7 5.9 1 23 253 275 253 275 0.97
5 17 0.011 2.6 11.3 3.2 1 23 285 307 285 307 0.99
6 17 0.00092 0.22 14.7 4.0 1 23 313 335 313 335 0.97
7 17 0.056 13 9.1 1.8 1 23 341 363 341 363 0.98
8 17 2.3e-05 0.0054 19.7 4.3 1 23 369 391 369 391 0.99
9 17 0.0014 0.33 14.1 3.3 1 23 397 419 397 419 0.98
10 17 3.6e-05 0.0086 19.1 2.9 1 23 425 447 425 447 0.99
11 17 0.00059 0.14 15.3 5.4 1 23 453 475 453 475 0.99
12 17 0.00012 0.028 17.5 3.2 1 23 481 503 481 503 0.98
13 17 0.0015 0.36 14.0 6.7 1 23 509 531 509 531 0.98
14 17 0.002 0.48 13.6 5.3 1 23 537 559 537 559 0.99
15 17 0.0014 0.34 14.1 6.8 1 23 565 587 565 587 0.98
16 17 0.0015 0.36 14.0 6.5 1 23 593 615 593 615 0.98
17 17 3.2e-06 0.00077 22.4 4.7 1 23 621 643 621 643 0.98

Sequence Information

Coding Sequence
ATGGCAACAAAGAATTGTAGACTTTGCCTACAAGAAATAGTAGAAACTGAGTCATATTACTTTCTTAGCATCGACAATGAGTTAAAGCTAAAATCGAAGTTGTTGGATTTCATGccagaaattGACTTAAACCTCACAGCAAATCCAGTTACTTGTAATCAATGTATGAtcaaaatagaacaaatgaatGAATTCAAGCAACAGTGCAAACAAACCGAAACCACTATTAGAAACTTGAGACAAATATATAGCGTCTTAACCAATGATGAAAAAGAAACGGTCAAAGATGAGTTGCTTTGTGATAACATTAGACATGAACTTTCATTCTTGCAACTTATGAGTCGTGATGACGTGGAATTTAATAAGGATTTGCCTTTATGCATTGAAGAATCTTCAAAAACAGAATTATATTATTGCCACAACTGTGACTTCAACACTAATAAAAAGACAAATTTGATTCGTCATCTGAAGATACACAAGAACATCAGGTCTTATCAGTGTGATGTGTGTAATTATAGGtgtgaaaaaaagtttttgcttaAAGTTCATTTAAGAAAACACGGCAGGAACAATTGCGCTAAGAGTGATTACACATCAGTACAAAACGATGCATTTGGACTTCATCATTTAACAGACACCAACAAGAAATTATACCAATgttacaattgtaatttttttactcgtATAAAAAAAACCCTAATATCTCACATGCTCTTGCACAAACGTTTAGTTGTATTGTGCAAACGTATCAAGGTGCATAAATGTGACCAGTGTGACTATCAAACTTCAAATGAATGTGATTTTAAGAGACACATTACGAGCCACAGTTTGATAAAACAGTCTGGAAAAACATTCAAATGCACcttatgtgattattgcagtaacAGAAAAGCGATTTTAAAGGTTCATgtacgtaagcacactggtgaaaaaccatttaaatgcaatttatgcAATTATTGTACTACCAccatgtcaaatttaaaattacatgtgGATAGGCACACTCGTctaaaacgatttaaatgcaattcaTGCGATTACGGCAGCAACCGATTGCGagatttaaattttcatatgcGTCAGCACAATGGAGAAAAACCGTTTAAGTGCaacatatgtgattattgcagtaaaCGAAtggaacaattaaaaatacatatgcgtaaacacactggcgaaaaaccgtttaaatgcagtatatgtgctTACTGCAGTACTAACATggctaatttaaaaaagcatttatatACGCACTCGGGTGAAAAGccttttaaatgcaatatatgtgagtACTGCAGTAGTACAAAGTCGGTTTTAGaaattcatatgcgtaagcatactggtgaaaaaccatttaaatgcaatatttgttaTTACTGTAGCAGCCAATTGAGAagtttaaaactgcatatgcgtaaacacactggtgaaaaaccatttaaatgcaatatttgtaattactgtAGCATCCAATTGagaaatttaaaagtgcatatgaatcagcatactggtgaaaaaccatttaaatgcaatttatgtaattattgtgGTAGCAccatgtcaaatttaaaatcacatatgcataagcacaatGGTCTAAAaccttttaaatgcaatatatgcgaTTACTGCACTCACAGAAAAGTGTATTTGAGTATTCATGCACGTACGCACACTactgaaaaactatttaaatgcaatttatgtaattattgtaGTACCAccatatcaaatttaaaattacatatgcataagcatactggtctaaaactatttaaatgcaatttatgtaattattgtaGTCCCAccatgtcaaatttaaaatcacatatgcataagcacactggtctaaaaccatttaaatgcaatttatgtgattactgcagtaccactaAGGGTAATTTAACAAGGCATATGCGTAATCACACTGattgcaaaatcaaaaaaaagtttaagtaa
Protein Sequence
MATKNCRLCLQEIVETESYYFLSIDNELKLKSKLLDFMPEIDLNLTANPVTCNQCMIKIEQMNEFKQQCKQTETTIRNLRQIYSVLTNDEKETVKDELLCDNIRHELSFLQLMSRDDVEFNKDLPLCIEESSKTELYYCHNCDFNTNKKTNLIRHLKIHKNIRSYQCDVCNYRCEKKFLLKVHLRKHGRNNCAKSDYTSVQNDAFGLHHLTDTNKKLYQCYNCNFFTRIKKTLISHMLLHKRLVVLCKRIKVHKCDQCDYQTSNECDFKRHITSHSLIKQSGKTFKCTLCDYCSNRKAILKVHVRKHTGEKPFKCNLCNYCTTTMSNLKLHVDRHTRLKRFKCNSCDYGSNRLRDLNFHMRQHNGEKPFKCNICDYCSKRMEQLKIHMRKHTGEKPFKCSICAYCSTNMANLKKHLYTHSGEKPFKCNICEYCSSTKSVLEIHMRKHTGEKPFKCNICYYCSSQLRSLKLHMRKHTGEKPFKCNICNYCSIQLRNLKVHMNQHTGEKPFKCNLCNYCGSTMSNLKSHMHKHNGLKPFKCNICDYCTHRKVYLSIHARTHTTEKLFKCNLCNYCSTTISNLKLHMHKHTGLKLFKCNLCNYCSPTMSNLKSHMHKHTGLKPFKCNLCDYCSTTKGNLTRHMRNHTDCKIKKKFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-