Alei075456.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069435.1:108485510-108487037[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.086 21 8.5 2.4 1 20 122 141 122 143 0.95 2 12 4.1e-05 0.0099 18.9 3.9 1 23 186 208 186 208 0.98 3 12 1.7e-06 0.00042 23.2 2.6 1 23 214 236 214 236 0.99 4 12 1.1e-05 0.0026 20.7 3.7 1 23 242 264 242 264 0.99 5 12 4.3e-05 0.01 18.9 6.9 1 23 270 292 270 292 0.99 6 12 1.1e-06 0.00027 23.9 1.6 1 23 298 320 298 320 0.99 7 12 5e-05 0.012 18.6 4.6 1 23 326 348 326 348 0.98 8 12 7.2e-06 0.0017 21.3 2.2 1 23 354 376 354 376 0.98 9 12 8.9e-05 0.021 17.9 3.6 1 23 382 404 382 404 0.98 10 12 4.5e-05 0.011 18.8 0.2 1 23 410 432 410 432 0.98 11 12 0.0002 0.048 16.8 7.5 1 23 438 460 438 460 0.98 12 12 7.7e-05 0.018 18.1 0.8 1 23 466 488 466 488 0.99
Sequence Information
- Coding Sequence
- ATGAaggaaaatacaataaaactttgtcgaatttgttcactagaaatagtagaaaccgaACAGTATTACTTTCTGAATAACGACAATGAGTTAATGCTACAATCAAAGTTGATAGATTTTCtaccagaaattGATCTAAACGTCACACCGAACCCAGTTGTGTGTAACAATTGTATGATcacaattgaagaaatatataaatttaagcaACTATGTATACAAACCGAAATTACTATTAGGAACTTACGACAACAAGGAACAATTAAAGAAGAGTTATTtgatgaaaacattaaaatcgaAGTTTCAGACCTGTCGATCATCAACGATGCTGTTTGCAATGAGGGGCCTTTAACCACGGAGCTGTATTATTGCAACAACTGCAACTTTCACACTAACGAGAAGACTAATTTGATTCAACATTTAATTCatcgaaatttaaaaactcataCCTCTACAGACATTAAGAAGCATCACCGTTGTGATGAAAGCAATTACAAAACTTTATGCAAAGCTTCATTGGCAAATCACAGAAGTAAGCACACAGGTgacaaactatttaaatgcaatatgtgtgattaTGTCAGCAACAATAAAACGAATTTGAAAAttcatatgcataagcacactggtgaaaaaccgtttaaatgcaatatatgtaattattccTGTAATCAGAAGGCGAATTTGATCATTCATATACGTAAACACATGGGTGACaagccatttaaatgtaatatatgtgattattgtagtACCAAcatgggaaatttaaaaaagcatatgctcaagcacactggtgaaaaaccatttcaatgcaatatatgtaattactgcagTACATCCAGCTCgcatttaaaaacacatgtgcgtaagcacactggtgaaaaaccgtttaaatgcaatatatgtaattattccTGTATCCAGAAGGCGAATTTGAACATTCATATACGTATACACATgggcgaaaaaccatttaaatgcaatacatgtgattactgtagtaccaACAtgggtaatttaaaaaagcatatgcttaagcacactggtgaaaaaccatttgaGTGCAATATATGCGATTATTGTACTATTAAcatgggaaatttaaaaaagcatatacgcaagcacactggtgagaaaccatttaagtgcaatatatgtgattactgtagtgcTTCACAGTCGGTTTTAAAAAGGCACATGTTTAAGCACACTGGcgataaaccatttaaatgcaatatttgtgattactcTAGCGTCCAATCGGGAGGTTTAAAAACGCATCTGCTTgtgcacactggtgaaaaaccgtttaaatgcaatatatgcgaTTACTGCAGTAACACTAGGGCACATTTAAAAgcgcatatgcataagcacattGACGAAAAACCATTTCagtgcaatatatgtgattactatAATACTGACAATGAGGACTTAAAAAGGCATATACGTATGCATGGTGTAGAaaaatga
- Protein Sequence
- MKENTIKLCRICSLEIVETEQYYFLNNDNELMLQSKLIDFLPEIDLNVTPNPVVCNNCMITIEEIYKFKQLCIQTEITIRNLRQQGTIKEELFDENIKIEVSDLSIINDAVCNEGPLTTELYYCNNCNFHTNEKTNLIQHLIHRNLKTHTSTDIKKHHRCDESNYKTLCKASLANHRSKHTGDKLFKCNMCDYVSNNKTNLKIHMHKHTGEKPFKCNICNYSCNQKANLIIHIRKHMGDKPFKCNICDYCSTNMGNLKKHMLKHTGEKPFQCNICNYCSTSSSHLKTHVRKHTGEKPFKCNICNYSCIQKANLNIHIRIHMGEKPFKCNTCDYCSTNMGNLKKHMLKHTGEKPFECNICDYCTINMGNLKKHIRKHTGEKPFKCNICDYCSASQSVLKRHMFKHTGDKPFKCNICDYSSVQSGGLKTHLLVHTGEKPFKCNICDYCSNTRAHLKAHMHKHIDEKPFQCNICDYYNTDNEDLKRHIRMHGVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00153733;
- 90% Identity
- -
- 80% Identity
- -