Alei029376.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:271190353-271195288[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.17 41 7.5 0.5 2 21 365 384 364 385 0.93 2 17 0.00017 0.04 17.0 2.7 1 23 388 410 388 410 0.98 3 17 5.4e-05 0.013 18.5 0.6 1 23 416 438 416 438 0.98 4 17 0.0037 0.88 12.8 2.2 2 23 445 466 444 466 0.97 5 17 9.8e-05 0.023 17.7 1.7 1 23 472 494 472 494 0.98 6 17 0.00015 0.035 17.2 3.0 1 23 500 522 500 522 0.98 7 17 0.0094 2.2 11.5 3.8 1 23 528 550 528 550 0.96 8 17 0.38 91 6.4 3.5 1 23 556 578 556 578 0.98 9 17 0.001 0.25 14.5 4.4 1 23 584 606 584 606 0.97 10 17 0.0017 0.41 13.8 3.7 1 23 612 634 612 634 0.98 11 17 0.00014 0.033 17.3 0.5 1 23 640 662 640 662 0.98 12 17 0.00031 0.075 16.1 3.3 1 23 668 690 668 690 0.98 13 17 0.00023 0.054 16.6 1.3 1 23 696 718 696 718 0.97 14 17 9.6e-05 0.023 17.8 0.7 1 23 724 746 724 746 0.98 15 17 0.0037 0.88 12.8 0.2 1 23 752 774 752 774 0.97 16 17 0.00061 0.15 15.2 1.1 1 23 780 802 780 802 0.97 17 17 0.00016 0.037 17.1 2.4 1 23 808 830 808 830 0.98
Sequence Information
- Coding Sequence
- atgttaaatgGTTTACCAACAAACTACGACCTGATGGTGATGGCTTTAGAAAATTCAGGTGTCAGTCTTACTACTGAATTgattaaatcaaaacttttacaAGAGGATATTAAAGTAGATGATCCTAATTCATGTACGGTTTATATGGCGGGGAAAAACAATCCACCAAATCGCAAACCATTTATACCAAAATGCTACAAATGTCACCAGAAAAGTCAAAAGGCACCACAATGTCCGAGAAAACTACATAATTCAGGTAATTCGAAAAATAATCCAAATAACAGTAATGGTGGTTTGTGTTTACTTACGGCTATGGCCACTCAAGTCAATACTCAACCATGGTATCTTGATTCAGCTTGTACAAATCATATGACTGgacaaaaaaatcgtttaactaattttcaaagtaaaaatgGCAATATTGACGTAACTGTTGCAAATAGCCAAAAACTAACCAGTAAAGGTCAAAGAGATGCTATTGTAACAATTAATGAAACAGAAAGGAGAATTTCAAATGTAGTCTATGTTCCAGGACTTAGCTTAAACCTGCTTTCTGTACATCAAATGGTTCAAAAAGGATTTGTTGTAGTGTTCTACAGAGAAGGATCGAGCATATTTTTAGAAAGTACTTGTAAAGGAGGTCTTTACCAACTCGATCAAACCCTTCCAGatgataaaactaaattagtaCAAACAGTTCATCAGGAAGATCCAAAAGTAAGTGCAAATATGGTTAaaacggagcagtattactttctaAACGACAATAAGTTAGAGGTACAATCGAAGTTGTTAGAGTTGTTACCAGAAATCGATTTAAACATGACACCTAACCCAATTATTTGTTACCCATGTACGATAACAATTGTGCAAATACACGAGTTTAAACAACTGTGCCTGCAAACCGAAACCACTGTAAGAGACTTACGTGGACCATTAGCTGTTAATGATGTTTcaaattgtgttaaaaaagaaataatcaaaGAAGAGTTGGTTGATGATAATATTAAAGTGGAACTTTTAGATTTACAAATTGTCAAAGATGACTGCTTGGAAATTAACACAGATATGCCTGTATGTGTTGATAAATGTGAATGCGATCAATGTGCTTTTCAAAGTGCAGATAAGAGTACTTTAAGCAGACACATGTTGGTAAAATCgtttgtttgtgaaacttgtggCTTTTCTACTCACCAAAAGCAGAATTTAAAGACACACATGCAGGTTCATAGCTCGGGAACATCTTTTGTTTGTGACACTTGCGGGTTCTCTACTGGTCAAAAGCGGAATCTAAAAACACACATGCTAGTTCATAGTTCAGTAAAACCATTGgtttgtgaaacttgtgggttTTCTACGCAACATAAATCGGGTTTTAAATATCACATGTTGACTCATAGTTCAGTAAAGCCgtttgtttgtgaaacttgtTTATTCTCTACTTCAGATAAGTCATATTTAAAGAAACACATGCTGACTCATAGCTTAGTAAAACCATTTGTTTGTGAAATTTGTTTATTCTCTACTTCacataaatcatatttaaaaagacaCATGCTGTCTCATAGCTCAGTTAAACCGTTTGTTTGCAAAACTTGTGGGTACTGTACGCAAAATAAACGGAGTTTAAAATCACATTCGTTGATTCATAGCTCGATAAAACAGTTTGTTTGTGAAGCATGTGGATTCTCCACGCATCACAGACAGGCTTTACAGTATCATAAGTTGACTCATACCACGGCGAAACCgtttttttgtgaaacttgTGACTTTTCTACGAAACATAAATCAAGTTTAAAGTTGCACTTACTGACTCATAACCTcgtaaaaccgtttgtttgcgaAACTTGTGGGTTCTCAACTCGacataaatcagtttttaagtATCACATGTTGACTCATGACCcggtaaaaccgtttgtttgcgaAACTTGTGGGTTCTCTACTCAACTTAACTCAAGTTTAAAGGCACACATGATGACCCACAGCTTGGTGAAACcgtttgtttgtaaaacttgtggGTTCTCCACACAATATAAATCAGGTTTAAGGCATCACATGCTGACTCATAGCTcggtaaaaccgtttgtttgtaaaacttgtggGTTCTCTACGAAACTTAAGTCAACTTTAAAGAGACACGTGTTGATACATAGCTCGATAAAACCGTTTACTTGTGAGATTTGTGGATTTTCTACTCAATTTAAGCCATCTTTAAAGAGACACATGATGGTACATAGCTCGGTAAAACCGTTTATTTGTGATATTTGTGGGTTTTCTACTGCGCTTAAATCGTATTTAATGATACACTCTCTGACTCATAGCGCGATAAAACCATTTGCTTGTGAAACTTGTGAGTTCTCTACGAAACTTAAGTCAACTTTAAAGAGACACATGTTGATACATAGCTCGGTAAATCAGTATATTTGTGAGATTTGTGGGTTTTCTACTCGATATCAGAGGTGTTTAAATAAACACATCCTGACTCATAGTTCGGTATAA
- Protein Sequence
- MLNGLPTNYDLMVMALENSGVSLTTELIKSKLLQEDIKVDDPNSCTVYMAGKNNPPNRKPFIPKCYKCHQKSQKAPQCPRKLHNSGNSKNNPNNSNGGLCLLTAMATQVNTQPWYLDSACTNHMTGQKNRLTNFQSKNGNIDVTVANSQKLTSKGQRDAIVTINETERRISNVVYVPGLSLNLLSVHQMVQKGFVVVFYREGSSIFLESTCKGGLYQLDQTLPDDKTKLVQTVHQEDPKVSANMVKTEQYYFLNDNKLEVQSKLLELLPEIDLNMTPNPIICYPCTITIVQIHEFKQLCLQTETTVRDLRGPLAVNDVSNCVKKEIIKEELVDDNIKVELLDLQIVKDDCLEINTDMPVCVDKCECDQCAFQSADKSTLSRHMLVKSFVCETCGFSTHQKQNLKTHMQVHSSGTSFVCDTCGFSTGQKRNLKTHMLVHSSVKPLVCETCGFSTQHKSGFKYHMLTHSSVKPFVCETCLFSTSDKSYLKKHMLTHSLVKPFVCEICLFSTSHKSYLKRHMLSHSSVKPFVCKTCGYCTQNKRSLKSHSLIHSSIKQFVCEACGFSTHHRQALQYHKLTHTTAKPFFCETCDFSTKHKSSLKLHLLTHNLVKPFVCETCGFSTRHKSVFKYHMLTHDPVKPFVCETCGFSTQLNSSLKAHMMTHSLVKPFVCKTCGFSTQYKSGLRHHMLTHSSVKPFVCKTCGFSTKLKSTLKRHVLIHSSIKPFTCEICGFSTQFKPSLKRHMMVHSSVKPFICDICGFSTALKSYLMIHSLTHSAIKPFACETCEFSTKLKSTLKRHMLIHSSVNQYICEICGFSTRYQRCLNKHILTHSSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -