Alei059053.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069434.1:79710743-79718336[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0082 2 11.7 4.7 2 23 931 952 930 952 0.97 2 15 0.12 28 8.0 5.8 2 23 959 980 958 980 0.96 3 15 0.028 6.6 10.0 1.3 1 23 986 1008 986 1008 0.96 4 15 0.0025 0.6 13.3 6.1 1 23 1014 1036 1014 1036 0.98 5 15 0.00035 0.083 16.0 1.0 1 23 1042 1064 1042 1064 0.97 6 15 0.0055 1.3 12.2 2.0 1 23 1070 1092 1070 1092 0.98 7 15 0.00026 0.061 16.4 1.9 1 23 1098 1120 1098 1120 0.98 8 15 8.9e-06 0.0021 21.0 1.8 1 23 1126 1148 1126 1148 0.98 9 15 0.0076 1.8 11.8 2.6 1 23 1154 1176 1154 1176 0.98 10 15 0.0033 0.78 12.9 1.3 1 23 1182 1204 1182 1204 0.96 11 15 0.0041 0.97 12.6 1.8 1 23 1210 1232 1210 1232 0.98 12 15 0.00031 0.075 16.1 2.1 1 23 1238 1260 1238 1260 0.97 13 15 0.0011 0.27 14.4 3.6 1 23 1266 1288 1266 1288 0.98 14 15 1.4e-05 0.0034 20.4 0.4 1 23 1294 1316 1294 1316 0.98 15 15 5.4e-05 0.013 18.5 1.1 1 23 1322 1344 1322 1344 0.98
Sequence Information
- Coding Sequence
- ATGAAGCCTTCAAATAATACAACTCAAATAGTGTTACTGAAAGGTACAGAAAATTGGGACGTATGGAAgtttaacataaaaatctttgcgACATCAGCAGATGTGTGGGAAGTAATACAGAATAACATAAAACCAGATGTTGAAGAAGATTCAgctaaagaaataagaaaatggcAAAAGAAAGATAGCTACGCTCAACAACTAATTACTTCGAGAATGACCGAAACAACTCTTTTGCACATCATGACTTGTGAAACAGCCCACGAAATGTGGACTAAACTACTCTCCATTTATGATCAATATAATGAAGTAACATTACATACACTGCAACAACAATTTTTCTcctataaatataaacaagaaaaaggaAATAACTTAGCAAAACACGTAGCAGAAATAAATTTGatcttgaataaaaatgtacacATACTAAGAAACGATGGCGGATCAGAATTCTTAAATATAGATgtaagtaatttgttaaaaaaatatggcaTCATTCAACAAACTAGTGTAAGATATTCACCGCAACAAATGGGTAAAATAGAACGTGAGAACCGTACTGTAGTTGAAGCTGCCCGAacaatgttgttaaaaaatacaaatctatCTAAAAATCTTTGGGCGGAAGCTGTCAACACAGCAGTTTACGTGTTAAATAGAAGTAGTACTAGTTATACTGAAAATAAAACTCCTTACCAAATGTGGTGTAACAAAAAACCTgacttaacaaattttaaaatttttggctCACAAGTTTTCATTCATGTTCcgaaacaattaagaaaaaaatgggaTCCTAAAAGTAAGAAAGGCTTTTTTGTTGGATACGATGAGAACAAAAAGGGATTAAGAATATATTTACCTGAAGAGAACGAAATAGAAATATCGCGTGATGTAATATtcaaacctaaaaataaaaacctagaAGATGAAAAACAGGAAACACAAGAACCTGAAGAAAACAATACAGAAGagtattttccattttttaatgaaaaccaAGTCGTAGAAAACGACGAAAGCAGTGAAGATGAAAATCAAAATGTACAAGAAAGTGAAGATGAAAATCAAAATGTACAAGAAAATGAAGATGAAAATCAAAATGTACAAGAAAATGGAGAAGAATTGCAAAATGTTCAAGAAGATGAATACGAACAACAAAATATTCAAGACGTACAATCCAATATCATAAAAGAAGAACCAGAACTAAGTGATGTATCTTTAGAGGAAAATGTTAATCCTGAAGAGAATCCTAACGCAACATCCAGATCAGGTAGAATCGTAAAACCACCTACATGGCAAAGTGATTATGATATGACAGCGTACGTGAATTCACTGACAGAACCCATAACAATAGCAGAAGCTTTGGCAGGCCCAAATTCAACCGAATGGAGGAGAGCTATGGAGAATGAAATGAAATcacatgaaaaaaataaaacattcgaagtagtagataaaaaaattgataaaaatatactGCAAACCAGATGGgttcttaaaattaaacaagacgaaattaataaacaacccAAATTTAAAGCCAGATTGGTAATAAAAGGATGTAATCAGAAACCCGGAATCGATTACCAAGAAACTTTTTCTCCCGTAATTAAGTATTCATCActaagatatttattttcttatgcaGTAAAAATGGGACTAAAAATTATCCATATGGACGTATCTACAGCTTATTTGAATGGTGACTTAGAGGAAGAAATTTACGTAAAACCGCCAACTATTCTAAACTgtccaaataataaaatttggcttttaaaaaaatcggtttATGGTCTAAAGCAAAGCGGTCGATGttggaataaaaaattaaacgactCTTTATTAGAATTTGGATTAAAACCAACTGCTGCTGATCCTTGTGTGTATACCAACAACGATAAACATTACATATTGATTATTGCATCTTACGTTGAtgacttattaattttttataaccgagagcaaactaaaattaaaattaaaaatgaattaatttcgAAATTTGATATGAAAGATTTAGGACCAGTTAAAAAATGTCTTGGAATGAACataatttatgaaaatgaaACCATAATGTTGAATCAAACTGAGTATATAAAGAAGCTACTAGAAAAATTTGGAATGAGCAACTGTAATGCTGTGTCCACCCCTATGGACCCTGGTTGGCTTCCCAatgatgaagaagaaaaactaaatggCAATATACCTTACCAAGAAGCAATTGGAAGTTTACTGTATGCTTCACAAATTAGCCGTCCGGATATTGCATTCTCTGTCAACTTTTTAAGTAGATTTAACAATAGCTTTAATAATTCTCACTGGAATGCAGTAAAAAGAATATTTCGCTACCTAAAAGGTACACTTGATTATAAACTACAGTACACTAAAAATTCGGATAATGAATTGAAATGCTTCAGTGATTCAGACTGGGaaactaAGCAGTATTACTTTCTAAACAATGACAATGAGTTAGAACTACAATCGAAATTGTTAGAGTTGTTGCCAGAAATCgaCTTAAATATCACATCTAACCCAATTGTTTGTGATCAATGTATGATAACGATTAAGGAAatacatgaatttaaacaactGTGCTTGCTAACCGAAACCACTGTAAGAAACTTACGAGGACCAATACCTATTAATGATGTTccaatttacattaaaaaacaaataatcaaaGAAGAGTTAGTTGATAATGTTAAAGTGGAACATTTAGATTTACAAATTGCCAATGATGACTGTTTGGAAATCAATACAGATATGCCTGTTTGTATCGAGAAATGTAAATGCAATGAATGTGGTTTTCAAAGTGCAGATAAAAGTACATTTAAGAAACACAAGATGACTCATAGCTTTGAGAGACTGTGTGTTTGTAGAACTTGTGGTTTTTTTACTCATCAAAAATCGAGTTTAAAGGAACACATGATGAATCATAGGTCAATAAAACGGTTTATTTGTGAAACCTGTGGTTTCGCTACTCAtaaaaagttgaatttaaagaCTCATATGGTGATTCACAGCTTAGTCAAACCATTTGTCTGTGAAAGTTGTGGATTTTCTACTCAACATAAGTGTAATTTAAAGTCACACATGCGGACACATAGCTCGATAAAACCATTTGTTTGCGAGACTTGTGGGTTCTCTACtcaatataaatcaaatttaaagtcACACATTCTGAATCATAGCACTATAAAACCATTTGTTTGCGAATCTTGTGGGTTTTCTACTCAACATAAATCTCGTTTAAAGATACACATACTGACTCATAGCTCAGTAAAACcatttgtttgtgaaacttgtgggttCTCTAGTCAATATAAGTCATATTTAAAATCACACATGCAGACTCATAGCTcggtaaaaccgtttgtttgcgaAACTTGTGGGTTCTCTAGTCCACATAAGTCATCTTTAAAGGTACACATGCGGACACATAGTTCGGTAGAACCGTTTGTTTGCAAAACTTGTGGATTCTCTACTCAACATAAACCGCGTTTAAAAGTACACATGATGAGTCATAACTCGATAAAACCGTTTATTTGTGAAACTTGTGGTTTCTCTACTCACAAAAAGATGAATTTAAAGGCACACATGGTGATTCATAGCTCagtaaaaccgtttgtttgcgaAAGTTGTGAATTTTCTACTCAACATAAGTGGAACTTAAAGATACACATGCTCACTCACAACTCGATAAAACCGTTTATTTGCGAAACTTGTGGGTTCTCCACTCGACATACATCGAGTTTAAAGTCACATATGCTGATTCATAGCTcggtaaaaccgtttgtttgtgACACTTGTGGGTTCTCTACTCGATACCAGAGGTGTTTAAATACGCACATGCTGACTCATAACTTggtaaaaccgtttgtttgcgaAACTTGTGGGTTTTCTACCGGTGATAaggcaaatttaaagaaacacatGCTAACACACAGCTCagtaaaaccgtttgtttgcgaATCTTGTGGGTTTTCCACTAAATATAAGTCAACTCTAAATAGACACATGTTGATTCATAGCTCGGTAAAACTTGAATAA
- Protein Sequence
- MKPSNNTTQIVLLKGTENWDVWKFNIKIFATSADVWEVIQNNIKPDVEEDSAKEIRKWQKKDSYAQQLITSRMTETTLLHIMTCETAHEMWTKLLSIYDQYNEVTLHTLQQQFFSYKYKQEKGNNLAKHVAEINLILNKNVHILRNDGGSEFLNIDVSNLLKKYGIIQQTSVRYSPQQMGKIERENRTVVEAARTMLLKNTNLSKNLWAEAVNTAVYVLNRSSTSYTENKTPYQMWCNKKPDLTNFKIFGSQVFIHVPKQLRKKWDPKSKKGFFVGYDENKKGLRIYLPEENEIEISRDVIFKPKNKNLEDEKQETQEPEENNTEEYFPFFNENQVVENDESSEDENQNVQESEDENQNVQENEDENQNVQENGEELQNVQEDEYEQQNIQDVQSNIIKEEPELSDVSLEENVNPEENPNATSRSGRIVKPPTWQSDYDMTAYVNSLTEPITIAEALAGPNSTEWRRAMENEMKSHEKNKTFEVVDKKIDKNILQTRWVLKIKQDEINKQPKFKARLVIKGCNQKPGIDYQETFSPVIKYSSLRYLFSYAVKMGLKIIHMDVSTAYLNGDLEEEIYVKPPTILNCPNNKIWLLKKSVYGLKQSGRCWNKKLNDSLLEFGLKPTAADPCVYTNNDKHYILIIASYVDDLLIFYNREQTKIKIKNELISKFDMKDLGPVKKCLGMNIIYENETIMLNQTEYIKKLLEKFGMSNCNAVSTPMDPGWLPNDEEEKLNGNIPYQEAIGSLLYASQISRPDIAFSVNFLSRFNNSFNNSHWNAVKRIFRYLKGTLDYKLQYTKNSDNELKCFSDSDWETKQYYFLNNDNELELQSKLLELLPEIDLNITSNPIVCDQCMITIKEIHEFKQLCLLTETTVRNLRGPIPINDVPIYIKKQIIKEELVDNVKVEHLDLQIANDDCLEINTDMPVCIEKCKCNECGFQSADKSTFKKHKMTHSFERLCVCRTCGFFTHQKSSLKEHMMNHRSIKRFICETCGFATHKKLNLKTHMVIHSLVKPFVCESCGFSTQHKCNLKSHMRTHSSIKPFVCETCGFSTQYKSNLKSHILNHSTIKPFVCESCGFSTQHKSRLKIHILTHSSVKPFVCETCGFSSQYKSYLKSHMQTHSSVKPFVCETCGFSSPHKSSLKVHMRTHSSVEPFVCKTCGFSTQHKPRLKVHMMSHNSIKPFICETCGFSTHKKMNLKAHMVIHSSVKPFVCESCEFSTQHKWNLKIHMLTHNSIKPFICETCGFSTRHTSSLKSHMLIHSSVKPFVCDTCGFSTRYQRCLNTHMLTHNLVKPFVCETCGFSTGDKANLKKHMLTHSSVKPFVCESCGFSTKYKSTLNRHMLIHSSVKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -