Basic Information

Insect: Aquatica leii
Gene Symbol: -
Assembly: GCA_035610365.1
Location: CM069434.1:83235177-83237163[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00045 0.11 15.6 2.0 2 23 138 159 137 159 0.96

2 16 0.00065 0.15 15.2 1.5 1 23 165 187 165 187 0.96

3 16 0.00039 0.093 15.8 2.7 1 23 193 215 193 215 0.98

4 16 0.00048 0.12 15.5 8.3 1 23 221 243 221 243 0.98

5 16 0.00044 0.11 15.7 4.4 1 23 249 271 249 271 0.98

6 16 0.0024 0.58 13.4 5.5 1 23 277 299 277 299 0.98

7 16 7.2e-06 0.0017 21.3 3.3 1 23 305 327 305 327 0.98

8 16 0.00027 0.066 16.3 1.0 1 23 333 355 333 355 0.98

9 16 9.1e-05 0.022 17.8 1.7 1 23 361 383 361 383 0.98

10 16 0.0012 0.29 14.3 0.4 1 23 389 411 389 411 0.98

11 16 0.0014 0.34 14.1 3.1 1 23 417 439 417 439 0.98

12 16 0.00032 0.077 16.1 4.5 1 23 445 467 445 467 0.98

13 16 0.00078 0.19 14.9 5.1 1 23 501 523 501 523 0.97

14 16 0.00062 0.15 15.2 3.9 2 23 530 551 529 551 0.97

15 16 2.5e-05 0.0061 19.6 2.0 1 23 557 579 557 579 0.98

16 16 1.5e-05 0.0037 20.3 2.4 1 23 585 607 585 607 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00045	0.11	15.6	2.0	2	23	138	159	137	159	0.96
2	16	0.00065	0.15	15.2	1.5	1	23	165	187	165	187	0.96
3	16	0.00039	0.093	15.8	2.7	1	23	193	215	193	215	0.98
4	16	0.00048	0.12	15.5	8.3	1	23	221	243	221	243	0.98
5	16	0.00044	0.11	15.7	4.4	1	23	249	271	249	271	0.98
6	16	0.0024	0.58	13.4	5.5	1	23	277	299	277	299	0.98
7	16	7.2e-06	0.0017	21.3	3.3	1	23	305	327	305	327	0.98
8	16	0.00027	0.066	16.3	1.0	1	23	333	355	333	355	0.98
9	16	9.1e-05	0.022	17.8	1.7	1	23	361	383	361	383	0.98
10	16	0.0012	0.29	14.3	0.4	1	23	389	411	389	411	0.98
11	16	0.0014	0.34	14.1	3.1	1	23	417	439	417	439	0.98
12	16	0.00032	0.077	16.1	4.5	1	23	445	467	445	467	0.98
13	16	0.00078	0.19	14.9	5.1	1	23	501	523	501	523	0.97
14	16	0.00062	0.15	15.2	3.9	2	23	530	551	529	551	0.97
15	16	2.5e-05	0.0061	19.6	2.0	1	23	557	579	557	579	0.98
16	16	1.5e-05	0.0037	20.3	2.4	1	23	585	607	585	607	0.98

Sequence Information

Coding Sequence: ATGGGTGAAAATGCATTAAACACTTGCCGAATTTGTTtggaagaaataatagaaacggagcagtattactttctaAACAATGACAATGAGTTAGATCTACAATCGAAGTTGTTAGAGTTGTtgccaaaaattGCCCTAAATATCACACCTAATCCGATTGTTTGTGACCGATGTGTGATAACGATTAAGGAAatacatgaatttaaacaactGTGCCTGCAAACCGAAACTACTGTAAGAGACTTACGACGACTAATATCTGTTAATGATGTTTCaacttacattaaaaaagaaataatcaaaaaagagTTGGTTGATGATAATATTGAAGTCGAGCTTTTGGATTTACAAATTGTCAAAGATGATTGTTTGGAAATCAGTACAAATATGCCTGTATGTATTGACAAATGTAAATGCAATCAATGTGGTTTTCAAGGTGCAGATAAGAGTACTTTAAAAAGACACATGATGGGTCACAGCTTAGTAAAACACTTTGTTTGTGACACTTGTGGTTTCTCTACTCATCGAAAAGTGAATCTAAAGAAACACGTGGTGATCCATAGCTTCGTGAGACcatttgtttgtgaaacttgtgggttCTCTACTCAACGTAAGGCATGTTTAAAGTCTCACATGCTAACTCATAGCTCGGTAAAACCATTTGTTTGCGATACTTGTGGGTTTTCTACTCACCATAAATCACATTTGAAGTCACACATGAAGACACATAGCTTggtaaaaccgtttgtttgtgAGACTTGTGGGTTCTCTACGCATCATAAATCGAGTTTAAAGTCTCACATTCTAACTCATAGCTTgctaaaaccgtttgtttgcgaTACTTGTGGGTTCTCTACTCAACATAAATTTCATTTGAAGTCACACATGCTGAGTCATAGCTGggtaaaaccgtttgtttgcgaAACTTGTGGCTACTCTACTTCACATAAGTCATATTTAAAGAAACACTTGCTTACTCATAGCTcggtaaaaccgtttgtttgcgGTACTTGTGGGTTCTCCACTCAGTATAAATCGAGTTTAAAGTCACACATGGTGACTCATAGCTAtgtaaaaccgtttgtttgcgaAACTTGTGGATTCTCTACACAGTATAAGTCATATTTAAAGTCCCACATGCTGACTCATAGCATGGTAAAACCATTTGTTTGCGCAACTTGTGGGTTTTCTACTCAAAGTAAGCCATATTTAAAGACACACATGTTGATTCATAGCTcggtaaaaccgtttgtttgcaAAACTTGTGGTTTCTCTACTCGATATCAGAGATACTTCAATACACACATGCTGAATCATAGCTCAGTAAACCCGTTTGTTTGCGAAACTTGTGGGTTTTCTACTCGACATAAGACACGTTTAAGGTCGCACATGAAGACTCATGACTCGCTAAATCACACGGTTTGCAAAACTTGGGGGTTTCCTACTCAAAATCAGAGGTATTCAAATACACACATTCTGACTTATAACTTGGTAAAACGATTTGCTTGCGAAACTTGTGGGTTTTCTACTCATTCTAAGACACATTTAAAGTCACACATGATGACTCATGAGTCGCTAAATCACTTGGTTTGCAAAACTTGTGGGTTCTCTACTCGATATCAGAGGTGTTTAAATAAACACATGCTGACTCATAACTTGCTAAAACCATTTGTTTGCGAAACTTGTGGGTTTTGTACCGATGATAAATCAGATTTAAGGAAACACCTGTTGACTCATAGCTCGGTAAAGCCGTTTGTTTGCGAAACTTGTGGGTTTTCTACCTGTGATAAATCAGATTTAAGGAAACACCTGCTGACTCATAGCCCGGTAAAACCGTTTGTCTGCAAAACTTGTGGGTTCTCTACGCTACATAAATCGGGTTTAAATTCAAAGTCACACATGCTAACTCATAACTCGATAAAACTTCTGGACTCTTAA
Protein Sequence: MGENALNTCRICLEEIIETEQYYFLNNDNELDLQSKLLELLPKIALNITPNPIVCDRCVITIKEIHEFKQLCLQTETTVRDLRRLISVNDVSTYIKKEIIKKELVDDNIEVELLDLQIVKDDCLEISTNMPVCIDKCKCNQCGFQGADKSTLKRHMMGHSLVKHFVCDTCGFSTHRKVNLKKHVVIHSFVRPFVCETCGFSTQRKACLKSHMLTHSSVKPFVCDTCGFSTHHKSHLKSHMKTHSLVKPFVCETCGFSTHHKSSLKSHILTHSLLKPFVCDTCGFSTQHKFHLKSHMLSHSWVKPFVCETCGYSTSHKSYLKKHLLTHSSVKPFVCGTCGFSTQYKSSLKSHMVTHSYVKPFVCETCGFSTQYKSYLKSHMLTHSMVKPFVCATCGFSTQSKPYLKTHMLIHSSVKPFVCKTCGFSTRYQRYFNTHMLNHSSVNPFVCETCGFSTRHKTRLRSHMKTHDSLNHTVCKTWGFPTQNQRYSNTHILTYNLVKRFACETCGFSTHSKTHLKSHMMTHESLNHLVCKTCGFSTRYQRCLNKHMLTHNLLKPFVCETCGFCTDDKSDLRKHLLTHSSVKPFVCETCGFSTCDKSDLRKHLLTHSPVKPFVCKTCGFSTLHKSGLNSKSHMLTHNSIKLLDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -