Alei075454.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:108455824-108457681[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.026 6.3 10.1 0.8 1 21 149 169 149 170 0.94
2 16 0.31 73 6.7 1.2 3 21 189 210 187 211 0.89
3 16 0.56 1.3e+02 5.9 8.4 1 23 213 235 213 235 0.98
4 16 7.4e-05 0.018 18.1 0.7 1 23 241 263 241 263 0.98
5 16 1.9e-06 0.00046 23.1 1.8 1 23 269 291 269 291 0.99
6 16 3.9e-06 0.00094 22.1 3.5 1 23 297 319 297 319 0.99
7 16 7e-06 0.0017 21.3 3.2 1 23 325 347 325 347 0.98
8 16 4.8e-06 0.0011 21.9 4.5 1 23 353 375 353 375 0.99
9 16 0.00015 0.035 17.2 3.6 1 23 381 403 381 403 0.99
10 16 3.1e-06 0.00074 22.5 4.5 1 23 409 431 409 431 0.99
11 16 2.3e-05 0.0056 19.7 3.9 1 23 437 459 437 459 0.99
12 16 0.00015 0.035 17.2 6.7 1 23 465 487 465 487 0.98
13 16 0.0015 0.37 14.0 4.2 1 23 493 515 493 515 0.98
14 16 0.00097 0.23 14.6 4.8 1 23 521 543 521 543 0.98
15 16 7.3e-05 0.018 18.1 5.4 1 23 549 571 549 571 0.99
16 16 6e-05 0.014 18.4 3.0 1 23 577 599 577 599 0.98

Sequence Information

Coding Sequence
ATGAGCAAAATATACGAAAATATGGGGGAAAAGACAACATACGTTTGCCGGATTTGTTTACTGGAAATAGTAGAAactgagcagtattactttctgaaTAATGATAACGATTTAATGCTGCAATCAAAGTTGGTGGACTTTCTACCacaaattGATCTAAATATCACACCGAATCCAGTCGTTTGTAACGGATGTACGGTTACAATTGAAGAAATCTACgaatttaagcaactgtgtGTAAAAACCGAAACTACTATTAGGAACTTACGACAACAAGGAACAATTGGAACTACTGTAGGGAACGtacatcaacaaaaattaatcaaagaaGAGTCTTTTGACGATAACATTAAAATCGAAGATTTGCAAATCACCACTGATGACTGCTCAGAAATCAATACGGATGTGACTATATGCACTGAAGAACTTTTAAAAGCAGAACTGTATTATTGTTACAACTGTGACTTCAACACCAACAGAAAGATTAATTTGATTCAACATCTAAGTCGTGGAAAGCTAAAAACACATAGTGTTTGTAACGACATGAAAGTGAAGCGTCAAAGTTGCAATAAGTtcaatatttgtgattactcAAGCAACAAATTGGGATATTTGAAAACTCATATGCATAAGCCATTTCAATGCAACACATGTAATTACTGCATTACTAAGagactttatttaaataaacatacgcataagcacactggtgataaaccatttaaatgtaatgtatgTGATTACAGTAGTATCAGCATGACgaatttaaaaagacatataCTTCttcatactggtgaaaaaccatttaaatgcaatatttgtgattactcGAGCAATCAGTCAGGATCTTTAAAAactcatatgcgtaagcacaccggtgaaaaaccatttcaatgcaatatatgtgattactgcactaTCACCAATAcggatttaaaaaggcatatccgtaagcatactggtgagaaaccatttatatgtaatatttgtgattactcATGCAACCAATCaggatatttaaaaacacatatgcgtaagcacaccggtgaaaaaccatttcaatgcaatatatgtgattacagcACTACCACCAATACGGaattaaaaaggcatatgtgtAAGCATACTggagaaaaaccatttaaatgtaatatttgtgattactcGAGCAACCAATCAGGatgtttaaaaacacatgtacgtaagcacactggtgaaaaaccatttcagtgcaatatatgtgattacttttGTACCACCAAGTCtgctttaaaaatgcatatgcgtaagcacactggtgaaaagccgtttaaatgtaacatatgtgattattgtagtACCAACGGAtcggatttaaaaaagcatctgcgtaagcacactggcgaaaaaccatttaaatgcaaaatttgtaattattgctGTAACAACTCGGAATTATTGAAAACGCATATTCGTAaccacactggtgaaaaaccatttaaatgcaacataTGTAATTACTGTAGTACAATCATGgggaatttaaaaaagcatatgtataagcacactggtgaaaaaccatttaagtgTCATATGTGTAATTACCATACTATTACCATGGGGAATTTAAAAAGCCATATACGTttgcatactggtgaaaaaccatttaaatgtaatacatGTAATTACTGTAGTACCAAcatgggaaatttaaaaaagcatatccGTAAGCACAccggtgaaaaaccatttaaatgcagtatatgtaaTTACTGTACTACCAACATGgggaatttaaaaaagcatatactTCTGCATAGTAGAAAATGA
Protein Sequence
MSKIYENMGEKTTYVCRICLLEIVETEQYYFLNNDNDLMLQSKLVDFLPQIDLNITPNPVVCNGCTVTIEEIYEFKQLCVKTETTIRNLRQQGTIGTTVGNVHQQKLIKEESFDDNIKIEDLQITTDDCSEINTDVTICTEELLKAELYYCYNCDFNTNRKINLIQHLSRGKLKTHSVCNDMKVKRQSCNKFNICDYSSNKLGYLKTHMHKPFQCNTCNYCITKRLYLNKHTHKHTGDKPFKCNVCDYSSISMTNLKRHILLHTGEKPFKCNICDYSSNQSGSLKTHMRKHTGEKPFQCNICDYCTITNTDLKRHIRKHTGEKPFICNICDYSCNQSGYLKTHMRKHTGEKPFQCNICDYSTTTNTELKRHMCKHTGEKPFKCNICDYSSNQSGCLKTHVRKHTGEKPFQCNICDYFCTTKSALKMHMRKHTGEKPFKCNICDYCSTNGSDLKKHLRKHTGEKPFKCKICNYCCNNSELLKTHIRNHTGEKPFKCNICNYCSTIMGNLKKHMYKHTGEKPFKCHMCNYHTITMGNLKSHIRLHTGEKPFKCNTCNYCSTNMGNLKKHIRKHTGEKPFKCSICNYCTTNMGNLKKHILLHSRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-