Basic Information

Insect: Aquatica leii
Gene Symbol: -
Assembly: GCA_035610365.1
Location: CM069436.1:23863068-23865154[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.7e-05 0.011 18.7 1.7 1 23 188 210 188 210 0.98

2 12 0.00017 0.041 17.0 1.5 2 23 215 236 214 236 0.96

3 12 4.2e-06 0.001 22.0 0.4 1 23 242 264 242 264 0.98

4 12 1.1e-05 0.0026 20.7 3.1 3 23 272 292 270 292 0.96

5 12 2.5e-05 0.0059 19.6 0.2 3 23 300 320 298 320 0.96

6 12 5.2e-05 0.012 18.6 1.9 1 23 326 348 326 348 0.98

7 12 1.1e-06 0.00027 23.9 0.5 1 23 354 376 354 376 0.99

8 12 0.00018 0.043 16.9 0.6 1 23 382 404 382 404 0.98

9 12 3.2e-06 0.00075 22.4 0.2 1 23 410 432 410 432 0.98

10 12 7.8e-06 0.0019 21.2 3.2 1 23 438 460 438 460 0.99

11 12 3.7e-05 0.0089 19.1 0.2 1 23 466 488 466 488 0.97

12 12 0.00011 0.026 17.6 1.8 1 23 494 516 494 516 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.7e-05	0.011	18.7	1.7	1	23	188	210	188	210	0.98
2	12	0.00017	0.041	17.0	1.5	2	23	215	236	214	236	0.96
3	12	4.2e-06	0.001	22.0	0.4	1	23	242	264	242	264	0.98
4	12	1.1e-05	0.0026	20.7	3.1	3	23	272	292	270	292	0.96
5	12	2.5e-05	0.0059	19.6	0.2	3	23	300	320	298	320	0.96
6	12	5.2e-05	0.012	18.6	1.9	1	23	326	348	326	348	0.98
7	12	1.1e-06	0.00027	23.9	0.5	1	23	354	376	354	376	0.99
8	12	0.00018	0.043	16.9	0.6	1	23	382	404	382	404	0.98
9	12	3.2e-06	0.00075	22.4	0.2	1	23	410	432	410	432	0.98
10	12	7.8e-06	0.0019	21.2	3.2	1	23	438	460	438	460	0.99
11	12	3.7e-05	0.0089	19.1	0.2	1	23	466	488	466	488	0.97
12	12	0.00011	0.026	17.6	1.8	1	23	494	516	494	516	0.99

Sequence Information

Coding Sequence: ATGGAAGTCTTAAACGTTATTGCCGTAATCACCGACATTAATAAGATATGTAGAATTTGTTTAAGTGAAAAAGTACAAGCCGATCTTTGTAATTTATATGAAAACGCTTTTGATGTTATGATAGAAAATTTGATAAACGTAAAGCCAATAACATTAGACGGTCTACcgaattatatttgtaaaaaatgtgcTGATAAACTTAATGAAGCAGTCGATTTCAAAGAACAAATTCGTCAGTCAGAAGAGAGGCTTAAAGGAATGCTCATAAACAGTAAAACTGAATCATCTGATCTCACGCTAAAAGACCTTTTAACGACTAATTTTATAGAACACAAAATAGAATCTAATAAAGTAACAAATATATCTAAAGTAGAGATTAATTTAAACAGAAAGACATCTAGCAAACGgcgtaaaattaaaaaggaatTTAATCATATGTCTTCGAACCATTCATCAGAAGATGAACTTTACATTGCTGATGTATCAAATAAAGATCTAAAGAACGAAACCGTGATGGAAGAATTAAAAGCACAAACAGAAAATGCAAATGATGAATCGAAATAtacttgtaaaaaatgtaaaaaggcTTTTCGTTCTGCGACCGGTTATAGgattcatttaataaaacatgGTAACGAGTTAAACTGTGAAGTATGTGGAAAGAAGTTTCGTTtgattaaacatttaaatgcacATACAAAGATACATAAAGATTATAAACCACATGTTTGTAAGGTTTGCAGTAAAGGATTTGCGGCAGCTGGAAATTTAACGAAGCATATGAGAGTGCATGGTGGAGAGAAACGTCATTTATGTACTACTTGTGGCAGGCGATTCTATGAACCAGGTCATTTGCAGGTACACATGAGGACTCATACTGGAGAAAAGCCAATCATTTGTAACGTATGTGGAAAACGATTCTCTGATCCTCATGGATTAGTTGCACACAATAAAATTCACACTGGGGAGAGAAAATATGAGTGCAAAACATGCGGTAAACGTTTTGCACACTCGTTTGTATTAACAGCTCATAATAGAATTCACACTGGTGAGAAGCCTTATACGTGTACTATTTGCGGTGCCTCTTATGCAACTAGTTCATATTTAACAATTCATAAGAGAACACACACCCAAGAAAAACCGTTCAGTTGTGAATCTTGTCCTAAAGCTTTTGTGAGTCGATGTGCATTAGTAGCACATACCATGACTCACACTGGCGAAAAAAGGTTTGAATGTCACGTTTGTGGTAAACGAGTAGCAAGAGCTGCAGATTTAAACATCCACTTAAGATCACATACAGGAGAACGTCCATATGTTTGTAATCAATGTCCAAAGCGGTATCATACTTCGAGTAACCTCTCTGCTCACAAAAGAACTCATTTGGGTATTAAAAACCATGTATGCACTATATGTGAAAAAGCGTTTGGGGATGCACGTACATTAAAAGGACACATTAGGATACATACAGGAGAAAAACCATATGTCTGTCAAATATGTTTCCATCGATATTCACAATCGGGGCAATTGGCTGCACATAGAAAAACGCATTTAGGACAATctgttaataaacaatatacgAATATTGAAATTGCCGAAGAAAAGAACTTGGTAGTAAAAGAAAGTGCAGTTCCATCCCAAATAATGCCAGTCTTAAATGTTAATTCTAATGAACAACTCGATGGCAATTACAATGATCAGTTTCTTGAATTTAAGAGAGATTCTGGAAATTACCAAAGACAAATTGTCTCacacattaatttaaaaggCACTGATGCTGAATTAGGCATTGAAATACAATCGCAACAACTGCTTTTATTGAACCAGTCTGAGCTTATACACCTTACGTCATCTGCAGATGCTGAAGATGTAACTAAAGTTGCTTTTGTAACTTAA
Protein Sequence: MEVLNVIAVITDINKICRICLSEKVQADLCNLYENAFDVMIENLINVKPITLDGLPNYICKKCADKLNEAVDFKEQIRQSEERLKGMLINSKTESSDLTLKDLLTTNFIEHKIESNKVTNISKVEINLNRKTSSKRRKIKKEFNHMSSNHSSEDELYIADVSNKDLKNETVMEELKAQTENANDESKYTCKKCKKAFRSATGYRIHLIKHGNELNCEVCGKKFRLIKHLNAHTKIHKDYKPHVCKVCSKGFAAAGNLTKHMRVHGGEKRHLCTTCGRRFYEPGHLQVHMRTHTGEKPIICNVCGKRFSDPHGLVAHNKIHTGERKYECKTCGKRFAHSFVLTAHNRIHTGEKPYTCTICGASYATSSYLTIHKRTHTQEKPFSCESCPKAFVSRCALVAHTMTHTGEKRFECHVCGKRVARAADLNIHLRSHTGERPYVCNQCPKRYHTSSNLSAHKRTHLGIKNHVCTICEKAFGDARTLKGHIRIHTGEKPYVCQICFHRYSQSGQLAAHRKTHLGQSVNKQYTNIEIAEEKNLVVKESAVPSQIMPVLNVNSNEQLDGNYNDQFLEFKRDSGNYQRQIVSHINLKGTDAELGIEIQSQQLLLLNQSELIHLTSSADAEDVTKVAFVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00151836;
90% Identity: -
80% Identity: -