Alei029526.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:272572715-272579570[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 4.7e+02 4.2 3.8 2 23 136 157 136 157 0.97 2 19 0.96 2.3e+02 5.2 2.0 1 23 163 185 163 185 0.95 3 19 0.00041 0.097 15.8 1.3 1 23 191 213 191 213 0.98 4 19 0.009 2.2 11.5 0.3 1 23 219 241 219 241 0.97 5 19 0.013 3 11.1 0.1 2 23 248 269 247 269 0.96 6 19 0.00075 0.18 15.0 2.6 1 23 275 297 275 297 0.98 7 19 0.00047 0.11 15.6 0.1 2 23 304 325 303 325 0.97 8 19 0.0011 0.27 14.4 0.9 1 23 331 353 331 353 0.97 9 19 0.24 57 7.1 4.9 2 23 360 381 359 381 0.97 10 19 0.0015 0.36 14.0 0.7 2 23 388 409 387 409 0.97 11 19 0.00026 0.063 16.4 2.9 1 23 503 525 503 525 0.99 12 19 5.8e-05 0.014 18.4 2.7 1 23 531 553 531 553 0.98 13 19 0.028 6.6 10.0 3.6 1 23 559 581 559 581 0.98 14 19 3.9e-05 0.0094 19.0 2.2 1 23 587 609 587 609 0.98 15 19 0.00055 0.13 15.4 1.0 1 23 615 637 615 637 0.98 16 19 7.9e-06 0.0019 21.2 2.5 1 23 643 665 643 665 0.98 17 19 2.2e-05 0.0053 19.8 1.2 1 23 671 693 671 693 0.98 18 19 5.5e-05 0.013 18.5 2.1 2 23 700 721 699 721 0.97 19 19 3.3e-06 0.0008 22.4 1.1 1 23 727 749 727 749 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAAATACAACATTCGCCTGTCGTATTTGTATACAAGAAATTATAGAAACTGAGCAGTATTACTGTCTAACCAACGATAAGGAGTTAGAGCTACAATCGAAATTGTTAGAGTTGTTGCCAGAAATCGACTTAAACATTACACCTAACCCGATTATTTGTGACCGATGCAAGACAGCGATTGAGGAAATACACGAATTTAAACAACTGTGCCTTCAAACGGAAACCACTGTAAGGGACTTACGAGTACTAATACCAGTTATTGATGTTTcaacttatattaaaaaagaaatactcAAAGAAAATACGGTTGATGATAATGTTAAAGTTGAGCTTTTAGATTTACAAGTTGTCAACGATGACTGCTTGGAAATCAACACAGATGTGCCTGTATGTATTGAGAAATGCAATCAATGTGGTTTTCAAAGTGCATGTAGGATTACTTTCAACAGGCACATGATGACTCATAGTTTGATGAAATCCtttgtttgtgaaacttgtggTTTTTCTACACATCTTAAATTGCGTTTAAAGTCCCACATGGTCAATCATAGCTCagtaaaaccgtttgtttgcgaAACTTGTGGGTTCTCTACTTTATATAAGTCAAATTTAAAGACACACATGCTTACTCATACCTCTGTGAAACCGTTTGTTTGCGAAATTTGTAGGTTTTCTTCGCGACAAAAAGCGGGTTTAGAGTTACACAAGTTGTCTCATATCTCTGTAAAACCATTGATTTGCGAAACTTGTGGATATTCTACTCAACTTGGTTGGGATTTAAAGAGGCACATGCTGACCCATAACTcggtaaaaccgtttgtttgcgaAATTTGTTTATTCGCTACTTCACATAAGAACTATTTAAAGACACACATGCGAAGTCATACCTCGGTAAAACCTTTAGTTTGCGAAATTTGTGGGTTTAATTCGCGGCAAAAAGCGGGTTTAGAGTTACATATGTTGACTCATAGCTCGGTAAAACCATTCGTTTGCGAAACTTGTGGATACTCGACTCGTATTAAGCAGAGTTTAAACACACACATGCTGTTTCATAGCTTGGTAAAAACATTGGTTTGCGAAACTTGTGGGTTCTCGACACAACATAAATCGGATTTCAAGTGCCACATGTTGACTCATATTTCGGTAAAAGCGATGGTTTGCGAAACTTGTGGATACTCGACTCAACACGAGTGGGATTTAAAGAGACACGTGCTGACCCATAGCTCGggCTTAAACATCACACCTAACCCTATTGGATGTAACCGATGTATTATAACGATTGAGGAAATATACGAATTTAAACAACTGTGCCTGCAAACCGAAATTACTGTGAGGAACTTACGAGGACCAATACCAGTCAATGATGTCgctaattatgttaaaaaagaaatactcAAAGAAGAGTTGGTTGATGATATTAAAGTCGAACTTTTAGATTTAGAAATTGTCAATGATGACTGCTTGGAAATCAATACAGATGTGCCTGTATGTATCCAGACATTTAAATGCGATAAATGTAGTTTTCAAAGTGCATATAAGAGTACTTTAACGAGGCACATGATGACTCACAGATTGAAAAAACTGTTTGTTTGCAAAACTTGTGGGTACTTCACTCAACGTAAGTCAACTTTAAAATCACACATGTTAACTCATAGCTcggtaaaaccgtttgtttgcgaAACTTGTGGGTTCTCTACTCAATGTAAATCGTATTTGAAGTCCCACATGCTGACTCATAGCTCGGTAAAACCATTTGTTTGCGAAACTTGTGGGTTCTCGACTCAACACCAGTCAAATTTAAAGACACACATTTTGACTCATAGCTCTataaaaccgtttgtttgcgaAACTTGTGGATACTCTACTCAACTTAAGTCGACTTTAAAGAGACACAGGTTGATTCACAGCTTCGTAAAAGCATTTGTTTGCGAAACTTGTGGATACTCAACTCAACATCAGTCAAATTTGAAGACGCACATGTTGACTCATAGCTCAGTAAAACGGTTTGTATGCGAAACTTGTGGGTTCTCTACTCGACTTAACTCAACTTTAAAGAGACACATGTTGACTCATATCTGCGCAAAACCGTTGGTTTGCGAAACTTGTGGGTTCTCGACTCAACACCAGTCAAATTTAAAGACACATATGTTGACTCATAGCTCGGTAAAACGGTTTGTTTGCGAAACTTGTGGGTTCTCAACTCAACAGAAGGCAAATTTAAAGAGACACATACGGACTCATATAGTTTGA
- Protein Sequence
- MDENTTFACRICIQEIIETEQYYCLTNDKELELQSKLLELLPEIDLNITPNPIICDRCKTAIEEIHEFKQLCLQTETTVRDLRVLIPVIDVSTYIKKEILKENTVDDNVKVELLDLQVVNDDCLEINTDVPVCIEKCNQCGFQSACRITFNRHMMTHSLMKSFVCETCGFSTHLKLRLKSHMVNHSSVKPFVCETCGFSTLYKSNLKTHMLTHTSVKPFVCEICRFSSRQKAGLELHKLSHISVKPLICETCGYSTQLGWDLKRHMLTHNSVKPFVCEICLFATSHKNYLKTHMRSHTSVKPLVCEICGFNSRQKAGLELHMLTHSSVKPFVCETCGYSTRIKQSLNTHMLFHSLVKTLVCETCGFSTQHKSDFKCHMLTHISVKAMVCETCGYSTQHEWDLKRHVLTHSSGLNITPNPIGCNRCIITIEEIYEFKQLCLQTEITVRNLRGPIPVNDVANYVKKEILKEELVDDIKVELLDLEIVNDDCLEINTDVPVCIQTFKCDKCSFQSAYKSTLTRHMMTHRLKKLFVCKTCGYFTQRKSTLKSHMLTHSSVKPFVCETCGFSTQCKSYLKSHMLTHSSVKPFVCETCGFSTQHQSNLKTHILTHSSIKPFVCETCGYSTQLKSTLKRHRLIHSFVKAFVCETCGYSTQHQSNLKTHMLTHSSVKRFVCETCGFSTRLNSTLKRHMLTHICAKPLVCETCGFSTQHQSNLKTHMLTHSSVKRFVCETCGFSTQQKANLKRHIRTHIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -