Alei055503.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069434.1:32682845-32684309[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.1e-05 0.017 18.2 2.6 1 23 140 162 140 162 0.98 2 11 6.4e-07 0.00015 24.6 2.8 1 23 168 190 168 190 0.98 3 11 2.7e-05 0.0063 19.5 2.2 1 23 196 218 196 218 0.98 4 11 1.9e-05 0.0046 20.0 0.7 1 23 224 246 224 246 0.99 5 11 2.2e-05 0.0054 19.7 0.7 1 23 252 274 252 274 0.98 6 11 7e-08 1.7e-05 27.6 0.7 1 23 280 303 280 303 0.97 7 11 1.6e-05 0.0038 20.2 4.9 1 23 309 331 309 331 0.95 8 11 6.7e-07 0.00016 24.5 0.4 1 23 340 362 340 362 0.99 9 11 2.8e-06 0.00067 22.6 3.3 1 23 368 390 368 390 0.99 10 11 6.1e-07 0.00015 24.7 1.6 3 23 398 418 396 418 0.96 11 11 6.4e-06 0.0015 21.5 2.1 1 23 424 446 424 446 0.98
Sequence Information
- Coding Sequence
- atGGATAATTATCAGTACattgaaatagaaaaagtttgtcgaatttgtatacaacaaaaacaagatttaagGCCTTTATTTAAGGGAAGTTTAGCAAATATGTTACAAGAGCTATCTTCGGTACAAgtaTTAGAAAATGATGGTTTACCTAAAGCACTGTGTGATCTATGTATTCGTGAAGTAAGTCGTTGGTATGCATTTAAGCAGCAAGTCGTAAATAACGACTCAATATTGAGATGTGTTATTTTAGAGAGGCAACAGAAAAATGACTTGGAAAATTCTGATTTTGAAAACCCTAGCGTTGAGACAATACACGAATTTATAGTTGACAATCCCAACCTTTTAAACAATCTAAGTGATTCTAAGATCTGTGATAATCAACAAGAAACCGAAAATGCAACTTTTGATGCTAATGCTTTTACATGCGATATATGTAAAAAGCAAGTTAAAACTATACATTCTTTACGAAGACATATTAAAATACACTCAGGAGAAAAACCACATAAATGTAAACTTTGCAATAAAAGCTTTGTCGAACCTGGAAATTTAACAAAGCATTTAAGAAAAcacaataaagataaaaaacacCAGTGCAATGTTTGTGGTCTTCGGTTTTatgaaagaaacaaattaacaattcaTATTAGAACGCATACTGGCGAGAAACCATACAGTTGTAAAGTGTGTACCCGACCATTTGCGACACCAGCCCAAGTTCATATACACATGaaaACACACACTGGGGACAAGCCATACACTTGTGACATTTGCTATAAATCATTCCCATATAGTGGTTCATTGGTCACtcacaaaaaaattcacaaaggTGAACGTTCATTTATATGCCCAGAATGTAATAAATCTTTTTCACAGAAGGTAAATTTGGACAGCCATATACGAACGAAACATACACACGAATGTCCCTTTTTATGCAACGAATGCCACAAATCTTACCCCACTAaggaacaattaaaaaatcatatacGCCACCACACGGGTGAAAGGAAACCTTTAAATTACACGTGCACTGTTTGTCAAAAGCAGTTTAGCACACCTGCCGAATTACGAATTCACACAAGGATACATACGGATGAAAGGCCTTATCAATGCGATTACTGTGGGAAAAATTTCAGAGCATCTTCTCATATGACATCTCATCGCCGAATACATACAGGTGAAAAAAACCATTTGTGCAAATATTGTGGAAAGGCATTTAGAGAATCGTCGACTCTTAAAATTCATATTCGAATTCATACCGGGGAAAGGCCTTATTGCTGTCAAATCTGTGGGGCTAATTTTACTCAAAGCAATACTTTAAATACTCATATGAAAATCCATAATAATTCGAATCGAAAAGATGATTAA
- Protein Sequence
- MDNYQYIEIEKVCRICIQQKQDLRPLFKGSLANMLQELSSVQVLENDGLPKALCDLCIREVSRWYAFKQQVVNNDSILRCVILERQQKNDLENSDFENPSVETIHEFIVDNPNLLNNLSDSKICDNQQETENATFDANAFTCDICKKQVKTIHSLRRHIKIHSGEKPHKCKLCNKSFVEPGNLTKHLRKHNKDKKHQCNVCGLRFYERNKLTIHIRTHTGEKPYSCKVCTRPFATPAQVHIHMKTHTGDKPYTCDICYKSFPYSGSLVTHKKIHKGERSFICPECNKSFSQKVNLDSHIRTKHTHECPFLCNECHKSYPTKEQLKNHIRHHTGERKPLNYTCTVCQKQFSTPAELRIHTRIHTDERPYQCDYCGKNFRASSHMTSHRRIHTGEKNHLCKYCGKAFRESSTLKIHIRIHTGERPYCCQICGANFTQSNTLNTHMKIHNNSNRKDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003941;
- 90% Identity
- -
- 80% Identity
- -