Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069432.1:272423847-272425629[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.068 16 8.8 3.7 1 23 125 147 125 147 0.98
2 16 0.00022 0.053 16.6 3.6 1 23 153 175 153 175 0.99
3 16 0.0002 0.049 16.7 4.9 1 23 181 203 181 203 0.98
4 16 0.00026 0.063 16.4 2.3 1 23 217 239 217 239 0.97
5 16 0.00036 0.086 16.0 3.8 1 23 245 267 245 267 0.97
6 16 1.2e-05 0.0029 20.6 2.0 1 23 273 295 273 295 0.98
7 16 1.4e-05 0.0033 20.4 4.7 1 23 301 323 301 323 0.98
8 16 0.00012 0.029 17.5 4.3 1 23 329 351 329 351 0.98
9 16 0.00016 0.039 17.0 3.6 1 23 357 379 357 379 0.98
10 16 3.9e-06 0.00093 22.1 1.4 1 23 385 407 385 407 0.98
11 16 0.003 0.71 13.1 5.3 1 23 413 435 413 435 0.97
12 16 0.00045 0.11 15.7 5.6 1 23 441 463 441 463 0.98
13 16 5.3e-05 0.013 18.6 0.8 1 23 469 491 469 491 0.98
14 16 4.7e-05 0.011 18.7 3.3 1 23 497 519 497 519 0.98
15 16 3.2e-05 0.0077 19.3 0.5 1 23 525 547 525 547 0.97
16 16 5.8e-06 0.0014 21.6 0.8 1 23 553 575 553 575 0.97

Sequence Information

Coding Sequence
ATGGGTGaaagtacaacaaaaacttGTCGAATTTGCCTACAAGAAATGAAAGAAACGGAGGAGTATCACGTTATAAGCAACGACAATGAGTTAAAGCTAAAATCTAAGTTATTAGGGTTGTTGCCAAAAATCGATTTGAACATCACATCTAACCCAATTATTTGTAACCGATGTATGATAACCATTGAAGAAATACTCGTTTTCAAGCGACTGTGCTTGCAAACCGAAACCACTGTAAGAAACTTGAGACGACCTTTTAATGATGctttaactaatattaaaaaagagaCAATTAAAGAAGAGTTGGTCGATGATAACAATAAAGATAATGATGTGGCTGCATATATTGAAGAACCTACAAAAGCGGAATTGTATTATTGCCATAACTGTGAGTTTAACACTAACAAGAAAAGGAATTTGATTCCACATAtgaaaatgcacaaaaacattGTGTTGTTTCAGtgcaatatttgtaattatagcTGTGTGAAAAAGTGGCTGTTTAAACAGCATTTGCGAATACACAGTAATGAGAAGCCATATAAATGCACTGAATGTGATTACAAAACAGCACGAAAACATTCACTTCAAAAGCACTTTTTAACACATGCCGATAAGAGCAATCGAACTTTGATCTGCCACAAACTGTTTGCATGTGAAACTTGTGAGTTCTCTACTAATCATAATTGGCAATTAAAGAGACACATGTTAACTCACAGTTCGGTAAAACCTTTTGCTTGTGGAACTTGTGGGTTCTCTACTCGACAAAAGTGCCATTTAAAGGCACACATACTGACTCACGGTTCGGAGAAACCGTTTGTATGCGAAACTTGTGGGTTCGCTACTCGATATCAGAAGAGTTTAAAGAAACACATGAAGACTCACATTGCTCCGATACCATTTGTTTGTGATAACTGTGGATTTTCTACTACACATAAGTGGCATTTAAAGAGACACATGCTGACTCACAGTTCAGAAAAACCATTTGTTTGTCAAATTTGTGGGTTTTCTACCCGACAAAATTGTCATTTAAAGACACACATGCTTATTCACAGTTCAAATAAACCATTTGTTTGCGAAACTTGTGGGTTTGCTACTCGACATCAGAAGTGTTTAAATGCACACATGATGACTCACAGCTCGGTGAAACcatttgtttgtgaaacttgtgggttCTCTACTCGACAAAACGGGCATTTGAAGGCACATATGCTAACACACAGTTCAGTAAAATCgtttgtttgtgaaacttgtgggttCTCTACTCGACATCAAAGGTGTTTAACAACGCACATGTACATTCACAGTGAGataaaaccgtttgtttgtgaaacttgtgggttTTCTACTCGACATCAGAGATGTTTAAATACGCACATGATGACTCACAACCCGGTAAAACCGTATGTTTGCGAAACGTGCGGGTTTTCTTCTGGGCAACGGTCGAAATTAAAAACGCACATGAAGATTCACAGCTCCGaaaaaccgtttgtttgcgaAACTTGTGGGTTTTCTACTCGACATCGGAATTCTTTAAAATCACACATGATGACTCACAGCTTGATGAAACGGTTTGTTTGCGATATTTGTGGGTTCTGTGCTCGACAACCATCAAGTTTAAAGAGACACGTAATGGCTCATAACTCGGGGAAACCATTTGCCTGCGAAACTTGTGGGTTCTCCGCTCGacaaaagtcaaatttaaagaCACACATGAAAGTTCACAGTTTGTAG
Protein Sequence
MGESTTKTCRICLQEMKETEEYHVISNDNELKLKSKLLGLLPKIDLNITSNPIICNRCMITIEEILVFKRLCLQTETTVRNLRRPFNDALTNIKKETIKEELVDDNNKDNDVAAYIEEPTKAELYYCHNCEFNTNKKRNLIPHMKMHKNIVLFQCNICNYSCVKKWLFKQHLRIHSNEKPYKCTECDYKTARKHSLQKHFLTHADKSNRTLICHKLFACETCEFSTNHNWQLKRHMLTHSSVKPFACGTCGFSTRQKCHLKAHILTHGSEKPFVCETCGFATRYQKSLKKHMKTHIAPIPFVCDNCGFSTTHKWHLKRHMLTHSSEKPFVCQICGFSTRQNCHLKTHMLIHSSNKPFVCETCGFATRHQKCLNAHMMTHSSVKPFVCETCGFSTRQNGHLKAHMLTHSSVKSFVCETCGFSTRHQRCLTTHMYIHSEIKPFVCETCGFSTRHQRCLNTHMMTHNPVKPYVCETCGFSSGQRSKLKTHMKIHSSEKPFVCETCGFSTRHRNSLKSHMMTHSLMKRFVCDICGFCARQPSSLKRHVMAHNSGKPFACETCGFSARQKSNLKTHMKVHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-