Basic Information

Insect: Aquatica leii
Gene Symbol: -
Assembly: GCA_035610365.1
Location: CM069438.1:9251514-9253182[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00032 0.076 16.1 0.3 2 23 21 42 20 42 0.95

2 16 0.00037 0.089 15.9 4.5 1 23 48 71 48 71 0.92

3 16 1.3e-05 0.003 20.5 1.8 1 23 77 99 77 99 0.98

4 16 0.02 4.8 10.5 1.1 3 23 107 128 105 128 0.94

5 16 5.6e-06 0.0013 21.6 0.3 1 23 133 155 133 155 0.98

6 16 0.00039 0.092 15.9 0.9 1 21 163 183 163 184 0.95

7 16 0.00018 0.043 16.9 0.5 2 23 196 217 195 217 0.95

8 16 0.00044 0.11 15.7 7.2 1 23 223 246 223 246 0.93

9 16 0.00016 0.038 17.1 1.8 1 23 252 274 252 274 0.97

10 16 0.0055 1.3 12.2 1.1 3 23 282 303 280 303 0.94

11 16 4.5e-07 0.00011 25.1 1.1 1 23 308 330 308 330 0.99

12 16 1e-06 0.00024 24.0 2.7 1 23 340 362 340 362 0.98

13 16 0.083 20 8.5 0.8 2 23 368 389 367 389 0.96

14 16 0.00039 0.092 15.9 1.9 1 23 395 417 395 417 0.98

15 16 2.1e-06 0.00051 23.0 1.0 1 23 423 445 423 445 0.99

16 16 0.001 0.24 14.5 0.4 1 23 451 474 451 474 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00032	0.076	16.1	0.3	2	23	21	42	20	42	0.95
2	16	0.00037	0.089	15.9	4.5	1	23	48	71	48	71	0.92
3	16	1.3e-05	0.003	20.5	1.8	1	23	77	99	77	99	0.98
4	16	0.02	4.8	10.5	1.1	3	23	107	128	105	128	0.94
5	16	5.6e-06	0.0013	21.6	0.3	1	23	133	155	133	155	0.98
6	16	0.00039	0.092	15.9	0.9	1	21	163	183	163	184	0.95
7	16	0.00018	0.043	16.9	0.5	2	23	196	217	195	217	0.95
8	16	0.00044	0.11	15.7	7.2	1	23	223	246	223	246	0.93
9	16	0.00016	0.038	17.1	1.8	1	23	252	274	252	274	0.97
10	16	0.0055	1.3	12.2	1.1	3	23	282	303	280	303	0.94
11	16	4.5e-07	0.00011	25.1	1.1	1	23	308	330	308	330	0.99
12	16	1e-06	0.00024	24.0	2.7	1	23	340	362	340	362	0.98
13	16	0.083	20	8.5	0.8	2	23	368	389	367	389	0.96
14	16	0.00039	0.092	15.9	1.9	1	23	395	417	395	417	0.98
15	16	2.1e-06	0.00051	23.0	1.0	1	23	423	445	423	445	0.99
16	16	0.001	0.24	14.5	0.4	1	23	451	474	451	474	0.98

Sequence Information

Coding Sequence: atgCTAAAGGCAGTATTCCTGTGggtTGTTACCGATAGCGCTCAGTTGAGATTTTTGAACCAATGCGACATTTGTCTAAAAATTTTCGCTCAAAAGGGCTATTTGACAAAACACAAAGTTATTCACAACGAAGAAAAACCTCATGCGTGTCATTTATGCCCAAAACGTTTTAAGCGCAAACACGGTCTTACGCTGCATGTAAATGGATTGCACAAAGATAGCAAAGACTACCAATGCGaagtttgcaacaaaaaattttccACTCAGAAGGTTTTGACAGCGCATAAGAGTCGCCATTCAAAAACATACGTGGTACATTGCGTTTTATGCGATAAGGGATTTTACTCACAACAGGTGTTTAAAAACCACCTTTCAAGCATACACGAAAAGATAGTATACGAATGCAGAATTTGCGGAAAACCGTTTGGGTCAAAGTTTGCTTTAAAATATCACATAGAAACGCACGACAATCCATCGGTTCACAAATTCCAGTGTACTTTATgcgataaaacttttaaattgaaaCGATCGTTGTACGGTCATCTTAAGGTTGTTACCGATAGCGCTCAGTTGAGATTTTTGAATCAATGCgacgtttgtttaaaaattttcgctCAAAAAAGCTATTTGACAAAACATAAAGTTATTCACAACGAAGAAAAGCCTCACGCGTGTCATTTATGTCAAAAACGTTTTAAGCGCAAACATAGTCTGACACTTCATATAAATGGATTTCACAAAGATAGCAAAGACTACCAATGCGaagtttgcaataaaaagttttcgACTAAGAAAATTTTGACGGCGCATAAAGATCGCCATTTAAAGAAATACGTGGTACATTGCGTTTTATGCAGGAAGGGGTTTTACTCACAGCAGGAACTTAAGAACCACGTTTCAAGCATACACGAAAAGATAGTATACGAATGCAGAATTTGCGGAAAACCGTACTCGTCGAATCACTCTTTGCGAATTCACATGGAAACGCATAGCGGCGACTCTGCATTAGTGAACAGATTTAAGTGCAGCGTGTGCGACAAGACTTTTCGACGCAAAGTGTTTTTAAGTCGTCATCTTAAGATTCATAACGATGATAAGTTGATGTGTCACCTGTGCGGTACGTTAAAGTCGAGTAGGGGTGGATTGACAGACCACATACGATCACATTTCAACGAGAAACCTCACAAATGCACGTTTTGCAACAAAAGTTTTGCGAAAGCTGGTATTTTGACTGTGCATCTTCGATCTCATACCGGTGTAAAACCGTACCGATGCGAAGTTTGCAAAAAGTCTTTTACGCAAAGGACTCCTTTAGTTATACACATGCGACAACACACTGGGGAAAAACCTTACAAATGCGATTTGTGCCCTGGCGCTTTTGTTACCAGGAATTTGATGAACGTCCACAAAAGGACCAGACATCGCATCGCTCTGTAA
Protein Sequence: MLKAVFLWVVTDSAQLRFLNQCDICLKIFAQKGYLTKHKVIHNEEKPHACHLCPKRFKRKHGLTLHVNGLHKDSKDYQCEVCNKKFSTQKVLTAHKSRHSKTYVVHCVLCDKGFYSQQVFKNHLSSIHEKIVYECRICGKPFGSKFALKYHIETHDNPSVHKFQCTLCDKTFKLKRSLYGHLKVVTDSAQLRFLNQCDVCLKIFAQKSYLTKHKVIHNEEKPHACHLCQKRFKRKHSLTLHINGFHKDSKDYQCEVCNKKFSTKKILTAHKDRHLKKYVVHCVLCRKGFYSQQELKNHVSSIHEKIVYECRICGKPYSSNHSLRIHMETHSGDSALVNRFKCSVCDKTFRRKVFLSRHLKIHNDDKLMCHLCGTLKSSRGGLTDHIRSHFNEKPHKCTFCNKSFAKAGILTVHLRSHTGVKPYRCEVCKKSFTQRTPLVIHMRQHTGEKPYKCDLCPGAFVTRNLMNVHKRTRHRIAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -