Alei098086.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069438.1:9219187-9226571[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0032 0.76 13.0 0.4 2 23 311 332 310 332 0.93 2 18 0.00016 0.039 17.0 6.0 1 23 338 361 338 361 0.97 3 18 0.015 3.5 10.9 0.4 1 23 367 389 367 389 0.94 4 18 0.00014 0.032 17.3 0.2 2 23 396 418 396 418 0.93 5 18 1.7e-05 0.0042 20.1 0.9 1 23 438 460 438 460 0.98 6 18 0.0013 0.31 14.2 3.4 1 23 470 492 470 492 0.94 7 18 1.9e-05 0.0045 20.0 1.8 1 23 498 520 498 520 0.98 8 18 0.0025 0.6 13.3 1.6 1 23 526 549 526 549 0.97 9 18 0.0022 0.52 13.5 1.1 2 23 568 589 567 589 0.97 10 18 0.0001 0.024 17.7 3.0 1 23 595 618 595 618 0.97 11 18 0.00031 0.074 16.2 0.7 1 23 624 646 624 646 0.98 12 18 0.0045 1.1 12.5 0.1 2 23 653 675 652 675 0.96 13 18 8.8e-06 0.0021 21.0 0.8 1 23 680 702 680 702 0.97 14 18 0.0057 1.4 12.2 4.1 1 23 712 734 712 734 0.97 15 18 0.0021 0.5 13.5 0.2 1 23 739 761 739 761 0.97 16 18 0.00096 0.23 14.6 0.3 3 23 769 789 767 789 0.97 17 18 0.0001 0.024 17.7 3.5 1 23 795 817 795 817 0.98 18 18 0.00084 0.2 14.8 0.5 1 19 823 841 823 843 0.95
Sequence Information
- Coding Sequence
- ATGCTGCTACGTaacgatattccgatacgtaacgatattccgatacgtaacGATATTTTGATACGTGGCGATATTCCGATATGCATTGATATTCTGATACGCATTGATATTCCGATAAGTagcgatattccgatacgtaacgatattccgatacgtaacGATATTTTGATACGTGGCGATATTCCGATATGTAACGATATTCCGATACATAACGATATTGCAATACGTaacgatattccgatacgtaacGACATTCCGATACGTaacgatattccgatacgtaacGATATTTCAATACGTTTTGATATGCTGCTACGTaacgatattccgatacgtaacgatattccgatacgtaacgatattccgatacgtaacGATATTGCGATACGTAACGATATTTTCATACGTGTTGATATTCCAATATGCATTAATATTCTGATACGCATTTATATTCCAAAACGTaacgatattccgatacgtaacGATATTCCGATACATAACGATATTCCAATACGGAACGATATTACGATACGTAACGATATTTTGATACGTGTTAATATTCCGATATGCATTGATATTCTGATACGCAttgatattccgatacgtaacgatattccgatacgtaacgatattccgatacgtaacgatactccgatacgtaacgatattccgatacgtaacGATATTCCGATACATAGCGATATTCCAATACATAACGATACTACGATACTTAACGAAATTTTGATACGTGTTAATATTCCGATATTCATTGATATTCTGATACGCATTGATATTCCGATACGTgacgatattccgatacGTTTTTTATGTCGCTTTACTTTAATCACCGACTCGTGGAGTTACAAGGGCGCGATCGAAGCTACgtccATTGATGAAAAACCAACAATTAATCAATTGAGATTCTTAAACCAATgtgaaatttgcttaaaaatctTTTCGACAAAAAATGGACTGACCGAGCACAAATACGCTCATAGTAAGGAAAGACCTCATCAGTGTACTGTGTGTTTAAAACGATTTAAGCGTAAGTCTCATCTCAATGGGCATGTAAGAAAAATGCACGAGGAGAGGAAAATTTACCAGTGCGATATATGTAACAAAACTTTGATGTCAGAATTGTCTTTGAAGTCGCACAAAGATGGTcatatgaaaaattacaaagCTTACTGTCCTATTTGTAACAAAGGATTTTTTGACCGTTACAACGTGACGAAACACATCTTGGGGGTGCACGAAAAACGCAGGTCTAAAATTGTTAGACCCAAAAAGGTTGTGCACGAGAAGGTTACGTACGAATGCCAAACTTGCGGAAAATTACTTTCGTCAAAGCAAAATTTGACGAAACATATCCAAATGCACGGAGAAAACTACAAACCTATATATAAATTCAAATGCAATTTATGCGATAAAAGATAtactacaaaaactaatttgagGTTCCATTCACAAATTCACTCTGGAGTAAAACCGTACCAGTGCAAACTTTGCGAAAACTCTTTTACCCGAAGTTATTCTTTGGTTATACATATGAAGTATCATACCGGTGAAAAACATCACAAATGTGATTTGTGCGACAGAGTTTTTGTGGCCGCCAATCTTTTGAACTATCACAAGAAGACCAAGCACGTTGCCGtGTCCATCGATGGAAATTCAAAAAACGTTCAGTTGGGATTTTTGAACCAATGCGACGTCTGCTTAGAAATCTTTTCTCATGCCAATCAGTTATTTCGTCATAAAGCCACTCACAGCGAAGATAGACCTTATGTGTGTTATTTCTGTTCAAAACGATTTAAGCGCAAAAACAACCTTTCCGTTCACATTACAAAAATGCACCAAAGCAGACAATATTACGAGTGCGATAtatgtaataaaagttttgcGTCGGAAATGTACGTGAAGCTACACAAAAATCGTCATATGAAAAACTACACAGTTTATTGCTCAATATGCGAGAAAGGATTTTATTCGCAACTCGATGTGAGGCAGCATATCTTGAAGATACACGAAAAAGTAAGGCACGAATGCAAAATTTGCGGAAAACCTATTACGACAAAATCGGGTTTGAAAAAACACGTGGAAACTCACAATGCCAGCTCTTCATCTATCGGGAAATTCAAATGCGATTTATGCGACAAAACCTTTAAATGGAAACGATCATTACATGATCATCGTCAGTTGCACAAAGGCGAGAAGTTTATATGCGATATTTGTGGAAGATCTCTGTTGACCAAAAAAAGTCTCGAGCAACATTTACTAATGCACAGCGGTATCAGACCATATGGGTGCAAACTTTGCgataaaagttttgcaaaaaagactgtTCTGGCCACGCATGTACGAGGTCACTCCGGTATAAAACCATTCAAATGTGAATTTTGCGAAAAATCCTTCACCCAACGACCTTATTTGATTATTCACACGAGACATCATACTGGGGAAAGGCCTTTTAAATGTGAGTTGTGCGACTTGACATTTGTGAGCCAGACTACTCTAAAAGTGCACAATAAATGTAAGCATCTAAAATATGACTGa
- Protein Sequence
- MLLRNDIPIRNDIPIRNDILIRGDIPICIDILIRIDIPISSDIPIRNDIPIRNDILIRGDIPICNDIPIHNDIAIRNDIPIRNDIPIRNDIPIRNDISIRFDMLLRNDIPIRNDIPIRNDIPIRNDIAIRNDIFIRVDIPICINILIRIYIPKRNDIPIRNDIPIHNDIPIRNDITIRNDILIRVNIPICIDILIRIDIPIRNDIPIRNDIPIRNDTPIRNDIPIRNDIPIHSDIPIHNDTTILNEILIRVNIPIFIDILIRIDIPIRDDIPIRFLCRFTLITDSWSYKGAIEATSIDEKPTINQLRFLNQCEICLKIFSTKNGLTEHKYAHSKERPHQCTVCLKRFKRKSHLNGHVRKMHEERKIYQCDICNKTLMSELSLKSHKDGHMKNYKAYCPICNKGFFDRYNVTKHILGVHEKRRSKIVRPKKVVHEKVTYECQTCGKLLSSKQNLTKHIQMHGENYKPIYKFKCNLCDKRYTTKTNLRFHSQIHSGVKPYQCKLCENSFTRSYSLVIHMKYHTGEKHHKCDLCDRVFVAANLLNYHKKTKHVAVSIDGNSKNVQLGFLNQCDVCLEIFSHANQLFRHKATHSEDRPYVCYFCSKRFKRKNNLSVHITKMHQSRQYYECDICNKSFASEMYVKLHKNRHMKNYTVYCSICEKGFYSQLDVRQHILKIHEKVRHECKICGKPITTKSGLKKHVETHNASSSSIGKFKCDLCDKTFKWKRSLHDHRQLHKGEKFICDICGRSLLTKKSLEQHLLMHSGIRPYGCKLCDKSFAKKTVLATHVRGHSGIKPFKCEFCEKSFTQRPYLIIHTRHHTGERPFKCELCDLTFVSQTTLKVHNKCKHLKYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -