Alei075022.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:105722787-105730780[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.2 48 7.3 1.5 1 20 127 146 127 148 0.95
2 19 0.2 48 7.3 1.5 1 20 211 230 211 232 0.95
3 19 9.5 2.3e+03 2.0 0.4 11 23 251 263 250 263 0.90
4 19 0.0035 0.83 12.9 3.8 1 23 269 291 269 291 0.98
5 19 5.2e-05 0.012 18.6 7.0 1 23 297 319 297 319 0.99
6 19 6.4e-07 0.00015 24.6 5.1 1 23 325 347 325 347 0.99
7 19 0.00062 0.15 15.2 5.5 1 23 353 376 353 376 0.96
8 19 0.00011 0.026 17.6 4.3 1 23 382 404 382 404 0.98
9 19 0.0002 0.048 16.8 6.4 1 23 410 432 410 432 0.98
10 19 2.2e-05 0.0053 19.8 5.4 1 23 438 460 438 460 0.99
11 19 9.5e-06 0.0023 20.9 3.4 1 23 466 488 466 488 0.99
12 19 6.6e-06 0.0016 21.4 2.9 1 23 494 516 494 516 0.99
13 19 6.6e-05 0.016 18.3 6.0 1 23 522 544 522 544 0.99
14 19 0.00014 0.033 17.3 1.4 1 23 550 572 550 572 0.99
15 19 0.00013 0.032 17.3 4.9 1 23 578 600 578 600 0.99
16 19 0.00011 0.026 17.6 5.4 1 23 606 628 606 628 0.99
17 19 5.5e-05 0.013 18.5 1.7 1 23 634 656 634 656 0.99
18 19 0.00016 0.039 17.0 7.4 1 23 662 684 662 684 0.99
19 19 4.5e-05 0.011 18.8 1.4 1 23 690 712 690 712 0.98

Sequence Information

Coding Sequence
ATGGaggaaaaaacaacaaatgtttgtcgaatttgtttactagaaatagtagaaaccgaGCAGTATTATTTTCTAGACGACAATGAGCTAATGCTACAATCAAAGTTGTTGTACCTTCtaccagaaattgatctaaatATCACATCGGACCCAGTTGTTTGTAACGGATGTATGATTACAATTGAAGAAATCTACgaatttaagcaactgtgtaTACAAACTGAAACTACTATAGGGAacttacaacaacaaaaagcaattaaaatagAGTGGTGTGATGATAACATCAAAATTGAAGACTTGCAAATCAGCAATGACTGCTTGGAAATCAAACCGGATGTGTCTGTTTATGccaaaaaatcttcaaaagaaGAATTGTATTATTGCTATAACTGTGACTTCAACACTAATAAGAAGATGAATTTGATTCAACACCTAATTCATGAAAAGCTAAATGCTGATAAGCATAAAGACATGAACGTGAAATTTTATTCCAGGAACTTACAGCAtcaaaaagtaatcaaaaaagAGTCGTTTGACGTTGAAGACTTGCAAATCACTAGCAATGACTGTTTGGAAATCAAACCGGATGTGACGGTATGTGCCCAAGAACCTTCAAAAGCGGaattgtattattgctacaactgcgACTTCAACACTAATAAGAAGATGAATTTGATTCAACACCTAATTCATGAAAAGCTAAATGCTGATATGCATAAAGACATGAACgtgaaattttattacattaccaCTAAGTCcgttttaaaaaaccatttgaataagcacactggtaaaaaactatttaaatgtaatgtatgtgattactgtacaTTCAGGATGTGGAATTTAAAAACGCATGAACGTCttcatactggtgaaaaaccatttacatgcaatatttgtgattactgcagtaccaccaaattgcatttaaaaacgcatatgcgtacgcacactggcgaaaaaccctttcaatgtaatatatgtgactACTGCAGTACCAACAAgtcgaatttaaaaaagcatatacgtaagcacactggAGAAAAGCCATTTCattgcaatatatgtgattactgctttACCACCAAGATGGGTTTAGAAAGTCATAaaatgcgtacgcacactggtgaaagaccatttaaatgcaatgtatgtgattactgtactaTCAGCATgaagaatttaaaaaggcatCAACGTCTTCATACTGGTGACAAACCATTTAGATGCAAGgtttgtgattactgcagtaccaccaaGTCAACTTTAAAAACTCATATGTTTAAGCATagtggtgaaaaaccatttcaatgcaatatatgtgattaccgcAGTAATAATTCATCGCATTTCAGaacgcatatgcgtaagcacactggcgaaaaaccatttcaatgcaatatatgtgattactgcagtaccaccaaGTCAGCTTTAACAACGCATGTGCGTAAacacactggcgaaaaaccattccaatgcaatatatgtgattactgcagtaccaccaaGTTGGGTTTAGAAAGGCATATGCGtacacacactggtgaaaaaccatttcaatgcaatATTTGTAATTACTCGTGCAATCAATCAGgatgtttaaaaattcatatgcgtaagcacactggtgaaaaaccatatcaatgtaatatttgtgattactcTAGCAGCGAAtcgagatttttaaaaattcatttgcgtaagcacactggtgaaaaaccatttaaatgcaatatttgtggTTACACTAGCAGGGAATCAAgatgtttaaaaacacatatgcgtaagcacactagtgaaaaaccatttaaatgcaatatttgtgattactcTAGCAAACAATCGCGATGTTTAAAAACTCATATACGCAAGCACAAcggtgaaaaaccatttcaatgcaatatttgtgattactcTAGCAGCGAATCgaggtttttaaaaattcatatgcgtaagcacactggtgaaaaaccatttaaatgcaacattTGTGTTTACTGCAGTACTACGATGTCgcatttaaaaaggcatatgcgtaagcacactggagAAAAACCTTTccaatgcaatatatgtgattactgtagtgccaacatgggaaatttaaaaaggcatatacTTCAGCACAGTGGTGAAACATGA
Protein Sequence
MEEKTTNVCRICLLEIVETEQYYFLDDNELMLQSKLLYLLPEIDLNITSDPVVCNGCMITIEEIYEFKQLCIQTETTIGNLQQQKAIKIEWCDDNIKIEDLQISNDCLEIKPDVSVYAKKSSKEELYYCYNCDFNTNKKMNLIQHLIHEKLNADKHKDMNVKFYSRNLQHQKVIKKESFDVEDLQITSNDCLEIKPDVTVCAQEPSKAELYYCYNCDFNTNKKMNLIQHLIHEKLNADMHKDMNVKFYYITTKSVLKNHLNKHTGKKLFKCNVCDYCTFRMWNLKTHERLHTGEKPFTCNICDYCSTTKLHLKTHMRTHTGEKPFQCNICDYCSTNKSNLKKHIRKHTGEKPFHCNICDYCFTTKMGLESHKMRTHTGERPFKCNVCDYCTISMKNLKRHQRLHTGDKPFRCKVCDYCSTTKSTLKTHMFKHSGEKPFQCNICDYRSNNSSHFRTHMRKHTGEKPFQCNICDYCSTTKSALTTHVRKHTGEKPFQCNICDYCSTTKLGLERHMRTHTGEKPFQCNICNYSCNQSGCLKIHMRKHTGEKPYQCNICDYSSSESRFLKIHLRKHTGEKPFKCNICGYTSRESRCLKTHMRKHTSEKPFKCNICDYSSKQSRCLKTHIRKHNGEKPFQCNICDYSSSESRFLKIHMRKHTGEKPFKCNICVYCSTTMSHLKRHMRKHTGEKPFQCNICDYCSANMGNLKRHILQHSGET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-