Alei029488.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:272403214-272405460[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0031 0.74 13.0 3.2 1 23 140 162 140 162 0.98 2 21 0.11 27 8.1 5.7 1 23 166 188 166 188 0.97 3 21 0.021 5 10.4 1.9 2 23 204 225 203 225 0.96 4 21 0.0045 1.1 12.5 3.0 1 23 231 253 231 253 0.97 5 21 0.0031 0.75 13.0 2.8 2 23 255 276 255 276 0.97 6 21 8.1e-05 0.019 18.0 0.4 1 23 282 304 282 304 0.98 7 21 3.6e-05 0.0086 19.1 0.8 1 23 310 332 310 332 0.98 8 21 5.6e-05 0.013 18.5 0.8 1 23 338 360 338 360 0.98 9 21 0.00015 0.035 17.2 0.1 1 23 366 388 366 388 0.98 10 21 4.4e-05 0.01 18.8 1.4 1 23 394 416 394 416 0.98 11 21 0.14 33 7.8 0.3 2 23 423 444 422 444 0.94 12 21 0.0011 0.26 14.4 1.5 1 23 450 472 450 472 0.95 13 21 0.00074 0.18 15.0 0.2 1 23 478 500 478 500 0.98 14 21 3.6 8.6e+02 3.4 0.5 1 23 507 529 507 529 0.87 15 21 0.0034 0.81 12.9 0.6 1 23 535 557 535 557 0.98 16 21 0.00015 0.036 17.2 0.3 1 23 566 588 566 588 0.98 17 21 5.8e-05 0.014 18.5 1.0 1 23 594 616 594 616 0.98 18 21 0.00094 0.22 14.6 0.8 1 23 622 644 622 644 0.98 19 21 3.1e-05 0.0075 19.3 2.6 1 23 650 672 650 672 0.98 20 21 3.8e-05 0.0092 19.0 1.0 1 23 678 700 678 700 0.98 21 21 0.0012 0.28 14.3 3.4 1 23 706 728 706 728 0.98
Sequence Information
- Coding Sequence
- ATGGGTGAAAATACAAGCACTTGCCGTATCTGTTTGCACGAACTAAAAGCAACGGAGCagtattattttctaaacaacGACAATGACTTATACCTACAATCGAAGTTGTTGGAGTTGTTGCCAAAAATCAACTTGAACATCACACCTAACCCAATTGTTTGTCACCGATGTATGACAACGATTGAGGAAATACACCAATTTAAACAACTATGCACGCAAACTGAAACCACTATAAGGAAATTGCGAAGACCTGTTAATGATATCTTAagttatgtaaaaaaagaaattatcaaAGATGAGATGGTTGATGATAACATTAAAGTCGAACCTTCAGACTTCCAAATCATCAAGGATGAATACACGCAAGTTGATACAGATGTGCCGGCATGTATTAAAGAttctttacaaacaaaattttattactgtcatGATTGTGACTTTAACACTAAGAAGGAAACGAATTTGATTTTACATCGGAAAGTGCATAAGAGGTCTTTTCACTGCAATGTGTGTAATTATAGCTGCGAGGAAAAGTTGTCATTTAAGAAGCATTTACAAATACACACTGGGGAGAAGCAAGAAGGTGATTACACATCAGCACTTCAACTTCATTGTCACGATTGTAATTATAATACCAATCAAAAAATGGCTTTGATCTTACACGTCATGGTTCATCGAAATATAAAACCTTTTGCATGTGATTTCTGTACATATTTTACCTATAGTAGGAAATCACTAAAAAGGCACATGTTATCACACAATGTATGTAGTCAATGTGGTTTTCAGAGTGCACAtaggtttagtttaaaaaaacacatgcTAACTCACAGCTTAGTGAAACCgtttgtttgtgaaacttgtggTTTTACTGCTTCATATAAGTCGGCTTTAAAGTCACACATGCTGAGCCACAGTTTGGTAAGACCATTTATTTGTGAAACTTGTGGATTTTCTACTCGATATCAAAACTCTTTAAAGGCACACATGCTGACTCATACCGGGGTAAAACCTTTTGTTTGCGAAACCTGTGGGTTCTCAACTCGACTAAAGGACTACTTAAAAAGACACATGTTAATTCATAGTACAGTAAAGCCATTTGTTTGCGAAACTTGTGGGTTTTCTACTGCACAAACGTGGGCTTTAAAGGCACATATGCTGACTCATAGCGAGGTAAAATCTTTTGTTTGTGACACTTGTGGGTTCTCTTCTCAATTTAAGTCTTCTTTAAAGGTACACATGAGGACTCACAAGTCGTTAAAACTATTAgtttgtgaaacttgtgggttCTCTACTGAATATCGagaggttttaaaaaaacactcgaCAATTCACAAATCGGCCAAACCGTTTCTTTGCGAAACTTGTGGGTACTCGACCCCATATCGCTCATGTTTAAATAGACACGTGGCAACTCACAGTTCGATAAAACcatttgtttgtgaaacttgtgggttCTCTACTGGACATCCGGCGGCTTTAAGGCAACACGCAAGGATTCacactttagtaaaaaaaccgTTTGCTTGTGAAATTTGTGGGTTTACTGCTCGAtgtcaatcaattttaaagtcaCATGTGTTGATTCACAGTTGTACAAAACCATTTATTTGTGAAACTTGTGAGTTTTCTACGCGAAATCAGTGGGTTTTAAAGAAACACGTGATGACTCACAGTTCGATAAAACCGGTAAAATCGTATGTTTGCGAAACTTGTGGGTACTCTGCTCGACTAAAGTACGATTTAAAAAGCCACATGTTAGTTCATAGTTCGGTAAAACcatttgtttgtgaaacttgtgggttCTCTACTGCAAATCCGCGACATCTTAAAAGACACGCGTTGACTCACAATTTGGTTAAACGCTTTGTGTGCGATACTTGTGGGTTCTCTACTCAACATAAAGCGTCTTTAAAAGTACACGTAATGATTCACCGTTCGATAAAACcatttgtttgtgaaacttgtgggttctctactcgacataaaaattctttaaggaTACACATGATGACCCACAGTTCGGCGAATCCGTTTGTTTGCGAAACTTGTGGGTTCACTTCTCGACAACGGCCAAATTTTAAAGCCCACTTGCGAACTCACAGCTCGGTAAAACCGTTTATTTGCGATACTTGCGGATTCTCGACTCGATATCGGCATTCGATAAATAGACACATGCAAACTCACAATTCGGTGAAATAG
- Protein Sequence
- MGENTSTCRICLHELKATEQYYFLNNDNDLYLQSKLLELLPKINLNITPNPIVCHRCMTTIEEIHQFKQLCTQTETTIRKLRRPVNDILSYVKKEIIKDEMVDDNIKVEPSDFQIIKDEYTQVDTDVPACIKDSLQTKFYYCHDCDFNTKKETNLILHRKVHKRSFHCNVCNYSCEEKLSFKKHLQIHTGEKQEGDYTSALQLHCHDCNYNTNQKMALILHVMVHRNIKPFACDFCTYFTYSRKSLKRHMLSHNVCSQCGFQSAHRFSLKKHMLTHSLVKPFVCETCGFTASYKSALKSHMLSHSLVRPFICETCGFSTRYQNSLKAHMLTHTGVKPFVCETCGFSTRLKDYLKRHMLIHSTVKPFVCETCGFSTAQTWALKAHMLTHSEVKSFVCDTCGFSSQFKSSLKVHMRTHKSLKLLVCETCGFSTEYREVLKKHSTIHKSAKPFLCETCGYSTPYRSCLNRHVATHSSIKPFVCETCGFSTGHPAALRQHARIHTLVKKPFACEICGFTARCQSILKSHVLIHSCTKPFICETCEFSTRNQWVLKKHVMTHSSIKPVKSYVCETCGYSARLKYDLKSHMLVHSSVKPFVCETCGFSTANPRHLKRHALTHNLVKRFVCDTCGFSTQHKASLKVHVMIHRSIKPFVCETCGFSTRHKNSLRIHMMTHSSANPFVCETCGFTSRQRPNFKAHLRTHSSVKPFICDTCGFSTRYRHSINRHMQTHNSVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -