Alei103545.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069438.1:53265041-53267072[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00029 0.071 16.2 2.6 1 23 186 208 186 208 0.99
2 17 1.3e-05 0.0032 20.5 5.2 1 23 214 236 214 236 0.99
3 17 5.6e-06 0.0013 21.6 1.9 1 23 242 264 242 264 0.99
4 17 0.00031 0.075 16.1 6.2 1 23 270 292 270 292 0.99
5 17 8.1e-05 0.019 18.0 9.4 1 23 298 320 298 320 0.99
6 17 2.5e-06 0.0006 22.7 3.7 1 23 326 348 326 348 0.99
7 17 0.00067 0.16 15.1 6.1 1 23 354 376 354 376 0.99
8 17 0.0038 0.91 12.7 4.9 1 23 382 404 382 404 0.99
9 17 0.00055 0.13 15.4 4.4 1 23 410 432 410 432 0.98
10 17 0.0024 0.57 13.4 5.0 1 23 438 460 438 460 0.98
11 17 0.0029 0.7 13.1 5.1 1 23 466 488 466 488 0.98
12 17 0.00014 0.034 17.2 3.0 1 23 494 516 494 516 0.98
13 17 1.1e-05 0.0026 20.7 1.2 1 23 522 544 522 544 0.99
14 17 3e-07 7.2e-05 25.6 1.7 1 23 550 572 550 572 0.99
15 17 0.00022 0.053 16.6 4.9 1 23 578 600 578 600 0.97
16 17 1.2e-05 0.0029 20.6 1.0 1 23 606 628 606 628 0.99
17 17 1.1e-05 0.0027 20.7 2.9 1 23 634 656 634 656 0.99

Sequence Information

Coding Sequence
ATGGCcgaaaaatcaacaaatacttgccgaatttgtttactagaaatagtagaaaccgagcagtattactttATCAGCAACGACAACGAATTAATGCTAGAATCCAAGTTGTTGGATTTTCTACCAGAAATCGATCTAAATGTCATATCGAACCCAATTGTTTGTAAAAGATGCATGattacaattgaagaaatatatcaatttaaacaaCTAGGTATACGAACCGAAACAACTATTAGGAATTTACGACAACAAGCAGCAATTAAAAAGGAGTTGTTTGACGAGAACATTGCAGTTGAACCTTCAGACTTGAAAATCATCAGCAATGACTATTTGGAAATCAATACAGATGTGCCTGCGTGCATCGAAGAACCTTCAAAACCGGAACCGTATTCTTCCTGCAACTGTGACTTCAACACTAGCAAGAAAACTAAGCGTCGAATTAATACAAATCTAAATCTGCATATCTGTAATAAGCACCTCAGTAAGAATGgtaaatgcaattataaaacttCTAACAAAATTTCATCGGCAAATAATACTGGTGaagaaccatttaaatgcaatatatgtgattattctAGTACCAAGATGACACgcttaaaaattcatatgcgtaaacacactggtgaaaaaccatttaaatgtaatatatgtgattactgtggTACGACTATGTCGcacttaaaaattcatatgcgcacacacactggtgaaaaaccatttaaatgtaatacatGTGATTACAGTGGTACCACCATGTCGaacttaaaaattcatatgcgtaaacacacaggtgaaaaaccatttaaatgtaatatatgtgctTGCTGCAGTACCAACAAGACTGATTTAGaaaggcatatgcgtaagcacactggtgagaaaccatttaaatgccatatatgtgattactgtagtaccaTAAAGTCGCATTTAACACGGCATATGCGTAaacatactggtgaaaaaccatataaatgcaatatatgtgattatagTAGTACTACCATGTCAcacttaaaaattcatatgcgtaaacacactggtgaaaaaccatataaatgtAATACATGTGATTACTCGTGTACCACCATGGCGCAGTTAAGACTTCATATGCATAAACACACTGCtgaaaaaccatataaatgcaacatatgtgattattgtagtACCACCACGGCACAGATAAAAATTCACATGCATAAACACAccggtgaaaaaccatttaaatgtaatatatgtggtCACGGTACCACCACCATGACACAGTTAAAAGTTCATATGcataaacacactggtgaaaagccatttaaatgtaatgtatgtgattactgtagtaccaCCATGGCACAGTTAAAACTTCATATGCATCAACACAcaggtgaaaaaccatttaaatgtgatgtatgtgattactgtagtatcaccatgaaacaattaaaagttcATATGCATAAACACACTGgggaaaaaccatttaaatgcaatatatgtgatagCAGTACTACTACCATGAGACATTTAAACGTTCATATGCGTCAACATACTGGTGAAaagccatttaaatgtaatatatgtgattacagtGGTACCACGATGTCGAAGTTAAACATtcatatgcgtaaacacactggtgagatactatttaaatgtaatatatgtgattacagtAGTACTACCTTgtcaaacttaaaaattcatatgcgtaaacatactggtgagaaaccatttatatgtaatatatgtgattactgcagtaccaccaaGGCACAGTTAAAACTTCATATGcataaacacactggtgaaaaaccatataaatgtaatatatgtgattacggTACTATCACCatgagaaatttaaaaattcatatgcgtaaacatactggtgagaaaccatttaaatgcaatatttgtgattactgtagtGCCACCAAGTCGCAGTTAAATTGGCATTTGCAGAAACACGCTGATGAAAGATGA
Protein Sequence
MAEKSTNTCRICLLEIVETEQYYFISNDNELMLESKLLDFLPEIDLNVISNPIVCKRCMITIEEIYQFKQLGIRTETTIRNLRQQAAIKKELFDENIAVEPSDLKIISNDYLEINTDVPACIEEPSKPEPYSSCNCDFNTSKKTKRRINTNLNLHICNKHLSKNGKCNYKTSNKISSANNTGEEPFKCNICDYSSTKMTRLKIHMRKHTGEKPFKCNICDYCGTTMSHLKIHMRTHTGEKPFKCNTCDYSGTTMSNLKIHMRKHTGEKPFKCNICACCSTNKTDLERHMRKHTGEKPFKCHICDYCSTIKSHLTRHMRKHTGEKPYKCNICDYSSTTMSHLKIHMRKHTGEKPYKCNTCDYSCTTMAQLRLHMHKHTAEKPYKCNICDYCSTTTAQIKIHMHKHTGEKPFKCNICGHGTTTMTQLKVHMHKHTGEKPFKCNVCDYCSTTMAQLKLHMHQHTGEKPFKCDVCDYCSITMKQLKVHMHKHTGEKPFKCNICDSSTTTMRHLNVHMRQHTGEKPFKCNICDYSGTTMSKLNIHMRKHTGEILFKCNICDYSSTTLSNLKIHMRKHTGEKPFICNICDYCSTTKAQLKLHMHKHTGEKPYKCNICDYGTITMRNLKIHMRKHTGEKPFKCNICDYCSATKSQLNWHLQKHADER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-