Alei074841.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:104821505-104823755[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.046 11 9.3 5.0 1 23 139 161 139 161 0.98
2 21 0.0079 1.9 11.7 2.6 1 23 167 189 167 189 0.98
3 21 5.8e-06 0.0014 21.6 5.6 1 23 199 221 199 221 0.99
4 21 0.001 0.24 14.5 8.3 1 23 227 250 227 250 0.98
5 21 3.7e-06 0.00087 22.2 2.5 1 23 256 278 256 278 0.99
6 21 2.6e-06 0.00061 22.7 2.8 1 23 284 306 284 306 0.99
7 21 5.9e-06 0.0014 21.6 2.3 1 23 312 334 312 334 0.99
8 21 0.0037 0.89 12.8 9.1 1 23 340 362 340 362 0.98
9 21 0.00026 0.062 16.4 3.6 1 23 368 390 368 390 0.98
10 21 0.022 5.3 10.3 4.0 1 23 396 418 396 418 0.98
11 21 3.8e-06 0.00092 22.2 5.3 1 23 427 449 427 449 0.99
12 21 0.0029 0.68 13.1 8.7 1 23 455 478 455 478 0.98
13 21 8.1e-05 0.019 18.0 10.1 1 23 484 506 484 506 0.99
14 21 0.00048 0.12 15.5 3.2 1 23 512 534 512 534 0.99
15 21 0.00019 0.046 16.8 9.1 1 23 540 562 540 562 0.99
16 21 1.3e-05 0.0032 20.4 5.7 1 23 568 590 568 590 0.98
17 21 6.1e-05 0.015 18.4 5.7 1 23 596 618 596 618 0.99
18 21 0.015 3.6 10.8 3.8 1 23 624 646 624 646 0.97
19 21 5.8e-05 0.014 18.4 5.0 1 23 652 674 652 674 0.99
20 21 0.026 6.1 10.1 1.1 1 23 680 702 680 702 0.97
21 21 2.3 5.5e+02 4.0 1.4 2 20 709 727 708 729 0.89

Sequence Information

Coding Sequence
ATGGCAACCAAcatttgtcgaatttgtttacaaaacatAGTGGATATTGAGCAATATTACTTTCTCAACAATATCAATgagttaaaactaaaatctaaattgtTGGATGTTCTGCCAGCAATCGATTTAAACATCACACCGAATCCAATTACTTGCAACCGATGTATAATcacaattgaagaaatatatacATTCAAGCAGCTGTGCATACAAACTGAAACTACTATTATGAACTTACAACGAATACCTTGTGACAATGTTTTAAACCATGTTAAAAAGGAAACGATCAAAGAGGAGTTGTTtgataataacattaaaatcgaACCTACAGATCTGCAAATTGTCAAAGATGACTGCTTGGGAATCAATAGGGGTATGTCTGTATGCATGGAAGAATCTTCAGAAACGGAATTATATCATTGTCATGACTGTGATttcaaaacaaatgaaaaagcaTATATGATTCAACATTTGAAGACACACAAGATCAGCAGGCCATTTCAATGCAACATGTGTAATTTTTCtactagttttaaaaatgtaataagacGTCATATGCGTTTACACGTTTGTACAGACatagaagaaaaactatttaagtgcaatatatgtgattattgcagtaacCGAAGAGACAGTTTGAAAaaacatatgcgtaagcacgctgatgaaaaaccatttaaatgccaTACATGTGGTTATTGCAGTAAACACAAGTCTGgtttaaaagaacatattatGAGAAAACACACttgtgagaaaccatttaaatgcaatatatgtgattattgcagtatcACTAAATCCGATTTAAACGTGCATATacgtaaacacactggtgaaaaaccatataaatgcaatgtatgtgattattgcagtatcACTAAATCCGATTTAAACgtgcatatgcgtaagcacactggtgaaaaaccatataagtgcaatgtatgtgattattcCAGTACCCAAAGTCAGAtgttaaaaacgcatatgcgtaggcacactggtgaaaaaccatttaaatgtaatgtatgTGATTATTGTAGTTACCGAAAATGTGCTTTGAAACATCATATGCGTCTGCATACCTGtgagaaaacatttaaatgcagtatttGTGATTATAGCAGTTACTACCAGAAGAATTTAGAAGAACATATGCAtaggcacactggtgaaaaaccatttaagtgTAATTTATGTGAATTTTGCAGTAACCGAAAAGGGCGTTTGAATATGCATTTGCGTttgcatactggtgaaaaactagaaaaactatttaagtgcaatatatgtgattattgcagtaacCGAAGAGACAATTTGAAAacacatatgcgtaagcacgctgatgaaaaaccatttaaatgccaTACATGTGGTTATTGCAGTAAACACAAGTACGgtttaaaagaacatattatGAGAaaacacactggtgagaaaccatttaaatgcaatttatgtgaTTATTGCTGTAGTCAATTGTcacatttaaaaacgcatatgcgtaagcacactggtgaaaaaccatttaaatgcaatatatgtgattactgcagtagcGCCATGCCAACTTTAAAGAAGcatatgcgtaaacacactggtgaaaaaccatttaaatgcaatatatgtactTACTGTTGCAGCCACGTGGAAAGTTTAAAACGACATATGCgaacgcacactggtgaaaaaccatttgaatgcaatatatgtgactaCTGCACTATTACCATGTcacatttaaaaaggcatatgcgtaagcacaccggtgagaaaccatttaaatgcaatttatgtgattactgcagcaAGAAGAAGTCAATGTTGAAAATACATATGCGTAGGCATAccggtgaaaaaccatttaactGTAGTTTTTGCAATTATCGCAATTACGATAAGTCGAAGTTAAAAGTACATATGCGTAGGCACACcggtgaaaaatcatttaaatgcaatatatgtggtTATTGCAGTTATGATAAGACAAAGTTGAAATTACATATGCGTAGACActctggtgaaaaaccattcaaATGCTCTCTTTGTATCGCTAGTTTTACTGAAAGGTATGATTTATCTAGGCACGAAAAACAACACTTAACCAAGCACACTTTAAATTGTGACAAATGCGATTTTAAAACCTTGCGTACATATCATTTGAAACAACATTTACTGTTATGCGACAAATCATGA
Protein Sequence
MATNICRICLQNIVDIEQYYFLNNINELKLKSKLLDVLPAIDLNITPNPITCNRCIITIEEIYTFKQLCIQTETTIMNLQRIPCDNVLNHVKKETIKEELFDNNIKIEPTDLQIVKDDCLGINRGMSVCMEESSETELYHCHDCDFKTNEKAYMIQHLKTHKISRPFQCNMCNFSTSFKNVIRRHMRLHVCTDIEEKLFKCNICDYCSNRRDSLKKHMRKHADEKPFKCHTCGYCSKHKSGLKEHIMRKHTCEKPFKCNICDYCSITKSDLNVHIRKHTGEKPYKCNVCDYCSITKSDLNVHMRKHTGEKPYKCNVCDYSSTQSQMLKTHMRRHTGEKPFKCNVCDYCSYRKCALKHHMRLHTCEKTFKCSICDYSSYYQKNLEEHMHRHTGEKPFKCNLCEFCSNRKGRLNMHLRLHTGEKLEKLFKCNICDYCSNRRDNLKTHMRKHADEKPFKCHTCGYCSKHKYGLKEHIMRKHTGEKPFKCNLCDYCCSQLSHLKTHMRKHTGEKPFKCNICDYCSSAMPTLKKHMRKHTGEKPFKCNICTYCCSHVESLKRHMRTHTGEKPFECNICDYCTITMSHLKRHMRKHTGEKPFKCNLCDYCSKKKSMLKIHMRRHTGEKPFNCSFCNYRNYDKSKLKVHMRRHTGEKSFKCNICGYCSYDKTKLKLHMRRHSGEKPFKCSLCIASFTERYDLSRHEKQHLTKHTLNCDKCDFKTLRTYHLKQHLLLCDKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-