Alei098101.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069438.1:9315369-9318706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 2.1e-05 0.0051 19.8 0.2 1 23 13 35 13 35 0.98 2 24 0.00023 0.054 16.6 2.1 1 23 41 64 41 64 0.96 3 24 0.00098 0.24 14.6 4.9 1 23 69 91 69 91 0.98 4 24 0.098 23 8.3 4.0 1 23 100 122 100 122 0.99 5 24 0.0088 2.1 11.6 0.1 1 23 128 150 128 150 0.95 6 24 6e-06 0.0014 21.5 0.6 1 23 156 178 156 178 0.98 7 24 3.9 9.4e+02 3.2 0.1 4 23 245 264 242 264 0.90 8 24 0.0011 0.27 14.4 1.7 1 23 283 306 283 306 0.95 9 24 0.03 7.2 9.9 6.1 1 23 311 334 311 334 0.96 10 24 0.025 6 10.1 0.4 1 23 340 362 340 362 0.98 11 24 0.00018 0.043 16.9 0.6 1 23 368 390 368 390 0.98 12 24 5.3e-05 0.013 18.6 0.5 1 23 396 419 396 419 0.97 13 24 0.0014 0.32 14.1 2.7 2 23 426 447 425 447 0.98 14 24 0.00019 0.046 16.8 1.9 3 23 455 475 454 475 0.98 15 24 4.5e-06 0.0011 21.9 0.7 1 23 481 503 481 503 0.96 16 24 3.8e-06 0.00091 22.2 2.4 1 23 509 531 509 531 0.98 17 24 0.0028 0.67 13.1 0.0 1 21 537 557 537 558 0.95 18 24 0.0038 0.9 12.7 0.8 1 20 574 593 574 595 0.94 19 24 0.23 55 7.1 6.2 1 23 601 623 601 623 0.97 20 24 0.23 55 7.1 1.0 1 21 777 797 777 798 0.95 21 24 0.079 19 8.6 0.2 2 23 805 827 805 827 0.92 22 24 0.019 4.6 10.5 1.5 3 23 833 853 832 853 0.97 23 24 0.02 4.8 10.5 4.7 1 23 859 882 859 882 0.96 24 24 8.9e-06 0.0021 21.0 1.5 1 23 887 909 887 909 0.98
Sequence Information
- Coding Sequence
- ATGCACGAAAAAGCGTCTCATTCTACCGATCGATCTTACGTGTGCGATATTTGTGGTAGTTCTTTTGCAACTAAACCTTATTTAAAATCGCACGAGAGGATTCATTCGAATGTCTATAAATATGAGTGCGATAAATGCGGCCGgggtttttataacaaaaacgcATTTAATCATCATTACGAGGTTCAACACAAAGGTGTGCGGTTTCAGTGCGAGCGCTGCAAAAAGACTTACACCAatgagtattattttaaaaagcattCGTTAACGCACGATCCGAATTTCGTCAAAAGCCAATACACGTGTGAAATTTGCAACAAAGTGCTGCATTATTTCAGGACTTACGTAAACCACACGAAAACTCATAAAGGTGAAAATAGGCACGTATGCGAGGTGTGCGGCAAAGTCTTCGGCTGGATACAAAGTTTAAAAGATCACATGCTGTTGCATCGTGgagaaaaaccatttatttgCCAAATCTGTGGCAAAACCTTTTCAAAGAAACAGTTAATGGTCGTGCACCAACGTGTACACACAAAATCAAAACCaaagtTAAACCAGAGCTGGTCGAATCGTTTACCAGAGATTGATATAATACCAGTACAAGACAATAAAAGATCGACTATGATTAAAATGGGgtataaaaatccttttaattaCACGCACTGCGATTTTAAAGGTAAAATCGCACAAGCGAAAGCTGCGGACGTTAATGCGACTAAGTggaattgtattatttgtaacgAGGTTATGCGTGATAAAAGAACTTTGATTGAGCACTACGAGAATCATAAGAACGAGCAAGAATGTAAAAAGGAGTTTGAAAACGCAGTTGTCGAAGACTATTTTAAGTGTACGGTGTGCACTCGAGAGTTTACCTCAACTGGCAGTTACGAAAAGCATTTGGAACAAAAACACGGCGAAAACCGCTACGCTTGTCAAGAATGTAATAAAACCTACAAGAGTTGTTTTTACCTGTGCTTGCACAATAACACCGTTCATTCTAAAGACCAAAACTACAGATGCGTAACCTGTGACTTTGTCACAATCGATCGCTCGGTTCTTAAGTTACATTTAGACAAACACGAAGAGGACTTAAAATATAAGTGCGATATTTGTGATAAGAAGTTTTTCAACGCCGTTCTATTGGACGAACACAAAAATTCCCACACCGGCGCAATGCCTTTCCAATGCGAAATTTGTTCTAGAAGTTTTCCGTACGCGAGTTACTTGGTTTCGCATAAAAAGAGCATACATTCAGAATCGGCCGTTAATAAATGCCgaatatgtttaaaacaatttgctcacaggaaaagtttaattttgcaTATTCGATCACACACCGGCGAAAACTCCGTTTTGTGCGATATGTGCGGAAAACGGTTGTCCAGTACCGAGCATTTAAAACAACACTTGCGTATTCACACTGGTTATAAACCACACGCGTGTTCGGTTTGTGGTAAAGGTTTTGCCAAAAAGAGTAATTTAACGTTGCACGAGCGCGTGCATAGTGGGGAGAAGCCTTACGTGTGCAGAGAATGCGGCAAGTGTTTTTCGCAACGTTCGACTTTGGTTATACACGAACGGTACCATTCAGGCGAAAGACCATATACATGTCCAATGTGCAATAAAGGTTTTGTGGCTAAAGGTTTATTGGGCGTTCACATTAAAAGCTGTTCTAGATTCGACCCGCTCACTGGACTCGTAACACAAACAGTCTACGAATGCGAAGTGTGCACtcaaatatttacaacaaaaaaagattttctcACACATCACATTAATCAATTCGGAGAAACGTTTCGGTGCTGCCGATGCGAGGAGCATTTTAAAACTACAACGGATTTGTATAACCATTACGAGATACATAAAAGTGGGGGTAGTGTAGTGGTTGAAAAGTTAACGGAGATTGAGTATAGAGATGGCTCTTCTAACGAGCTTTTGTACATATTAGATGGCTCTCAATGTATAAACGAAGTTGTTATTGAGGACGAGGGCGAGATTCGCGATACTGAAAGTGATAGTATGAAAAGCGATGCGAAGGAAGTTGTTAAAGTCGAGCATATAGAACACGGTTATATGTTGCCTAGTGTTTTTAAAGGTCAATTGGAAAGTAAGAAACGATATAAAAGGAGAGACATCGAATCTGTTGAAGGATTTGGGGAAGAAGAAAGTGCAATTGAAGCTATATTGACCACGGAAGCGACTTCTAGTAAAAGTACTCCTCCTCTGCCAAAAACCAGGCCGAAACGTCGTCACGAAATACCAGACTTTTCGGCTACTAATTATATTATGCTGAATCCTACTGAAGATTTGGATATTGTACATTATAAATGTTTACGGTGCGAACAGTTGTTCATTAGCAAATTTGGATTTTTTAGGCATATCGAAAAGGGTAGATGTTATATAAACAGTTGCGACGTTTGTAGTGCTTCGTTTGAGAAAAACAGTGAGTTTTACGATCATTATTTAGCGGAACACACGGATAGGgcgatttgtaatttttgttttcgaaCTTTTATGTACGAGAAAAACGTTAAGGAGCACATGCTTAGGCATTTGGATCAGTTTAGGCATCGGTGCGAACAGTGTAATAAAGGTTTCTACACGGTGCGAGAGTACAGGAACCACTATAAGAATCGACATATGGGAATTAGACATAAATGTGATGTTTGTGGACGTTCGTTCGCGGACGAATATTATTTTAAGCGACACGTAGCTACTCACGAAAAAGCTTTGGCTTCAAAAGTACAATTTAACGCGACATTTTAA
- Protein Sequence
- MHEKASHSTDRSYVCDICGSSFATKPYLKSHERIHSNVYKYECDKCGRGFYNKNAFNHHYEVQHKGVRFQCERCKKTYTNEYYFKKHSLTHDPNFVKSQYTCEICNKVLHYFRTYVNHTKTHKGENRHVCEVCGKVFGWIQSLKDHMLLHRGEKPFICQICGKTFSKKQLMVVHQRVHTKSKPKLNQSWSNRLPEIDIIPVQDNKRSTMIKMGYKNPFNYTHCDFKGKIAQAKAADVNATKWNCIICNEVMRDKRTLIEHYENHKNEQECKKEFENAVVEDYFKCTVCTREFTSTGSYEKHLEQKHGENRYACQECNKTYKSCFYLCLHNNTVHSKDQNYRCVTCDFVTIDRSVLKLHLDKHEEDLKYKCDICDKKFFNAVLLDEHKNSHTGAMPFQCEICSRSFPYASYLVSHKKSIHSESAVNKCRICLKQFAHRKSLILHIRSHTGENSVLCDMCGKRLSSTEHLKQHLRIHTGYKPHACSVCGKGFAKKSNLTLHERVHSGEKPYVCRECGKCFSQRSTLVIHERYHSGERPYTCPMCNKGFVAKGLLGVHIKSCSRFDPLTGLVTQTVYECEVCTQIFTTKKDFLTHHINQFGETFRCCRCEEHFKTTTDLYNHYEIHKSGGSVVVEKLTEIEYRDGSSNELLYILDGSQCINEVVIEDEGEIRDTESDSMKSDAKEVVKVEHIEHGYMLPSVFKGQLESKKRYKRRDIESVEGFGEEESAIEAILTTEATSSKSTPPLPKTRPKRRHEIPDFSATNYIMLNPTEDLDIVHYKCLRCEQLFISKFGFFRHIEKGRCYINSCDVCSASFEKNSEFYDHYLAEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEQCNKGFYTVREYRNHYKNRHMGIRHKCDVCGRSFADEYYFKRHVATHEKALASKVQFNATF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -