Alei098105.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069438.1:9325217-9329912[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0013 0.32 14.2 1.4 1 23 40 62 40 62 0.98
2 25 0.00013 0.031 17.3 0.4 1 23 77 99 77 99 0.98
3 25 0.0063 1.5 12.0 0.7 1 20 105 124 105 126 0.94
4 25 0.022 5.3 10.3 0.9 1 23 150 172 150 172 0.97
5 25 0.062 15 8.9 0.8 1 23 236 258 236 258 0.97
6 25 0.044 11 9.4 1.3 1 23 324 346 324 346 0.98
7 25 1 2.4e+02 5.1 0.1 2 23 393 414 392 414 0.92
8 25 0.012 2.9 11.1 7.1 1 23 628 650 628 650 0.98
9 25 0.00042 0.1 15.8 4.7 1 23 656 678 656 678 0.96
10 25 1.7e-06 0.00041 23.3 5.7 1 23 683 705 683 705 0.99
11 25 0.0011 0.27 14.4 1.5 2 23 712 733 711 734 0.94
12 25 0.00016 0.038 17.1 0.8 1 23 739 761 739 761 0.97
13 25 0.002 0.48 13.6 1.8 1 23 771 793 771 793 0.98
14 25 0.00028 0.068 16.3 3.3 1 23 799 821 799 821 0.96
15 25 1.2e-05 0.0029 20.6 0.6 1 23 827 849 827 849 0.98
16 25 7.9e-08 1.9e-05 27.5 3.2 1 23 855 877 855 877 0.99
17 25 0.005 1.2 12.4 5.0 5 23 886 904 883 904 0.95
18 25 0.0033 0.78 12.9 2.9 2 23 959 980 958 980 0.96
19 25 0.0014 0.34 14.1 2.2 2 23 1000 1021 999 1021 0.95
20 25 0.00049 0.12 15.5 0.1 3 23 1048 1069 1047 1069 0.98
21 25 1 2.5e+02 5.1 4.5 1 23 1073 1095 1073 1095 0.98
22 25 0.002 0.48 13.6 1.0 1 23 1106 1128 1106 1128 0.99
23 25 0.00037 0.088 15.9 0.2 1 23 1137 1159 1137 1159 0.98
24 25 0.00025 0.06 16.4 3.8 2 23 1165 1186 1164 1186 0.98
25 25 1.5e-05 0.0035 20.3 1.0 1 23 1195 1217 1195 1217 0.97

Sequence Information

Coding Sequence
ATGGCTCAGTATTTTATATCTAAACCCGTTATTGCAAAAGTAGATCGTGTAACGCCATCTACTCCCACGTTTGAAGATAAAATTAAGGAAAAACTATGTACGCTTAGTAAAAGTCAGTATTCTTGTAATCAATGCAAAGAGACTTTCGTCAACGAACTACAGATGAAACGTCATAAAATGGTTCACTTGATTAAGAACAAGTCGCAACTAGACGGTTATAAACAGTCATATCGATGCTACATATGCCGAAAAGCTTATGCCAAACGTGATGCTTTATGGTCGCACATCCGTCAACATTCTAAACACTTACAACATAAATGTAAAGATTGTAACGTAGTTTTTGAAACTAGTAATGGTTTTCAAGCGCACAAAACGGAATGCACGAAAAGGGATAACAACGTAAGCGCCCCTGTGATACCTGTTCCAAATTCAGAATCTAGTTTTAGATATAGGTGtaatatatgtttaaaaaaatttgaagatgtTTTTGAAATGCGCGAACATAAGGAATCTcattatgaaaaaaattctgCGACTCAAGACGGTGGTGAACCAACGATAGTAGAAGAGGTTTTAGTGCGGGAAGATTCCGTTCCCGAAACGAGCTCTGATGTTTTAGTTGATAAGGTTCAAGCGCACCAAACAGAATCCACGAAAAGGGATAACGTAAGCGCCCCCGTTCCAAATCCAGAATCTAGTTTTAGATATAGGTGTAGTAtatgtttaaagaaatttggAGATGTTTTTGAAATGCGCGAACATAAAGAATCTCACGGAAATAATTCTGCGACGCAAGATAGTGGTGAACAGACAATAGATGAGGTTTTAGTGCGGGAAAATTCTGTTCCTGAAACTAGCTCGGATGTTTTAGTTGATAAGGTTCAAGCGCACAAAACAGAATCCACGAAAAGGGATAACAACGTAAGCGCCCCGGTGATACCCGTTCCAAATCCAGAATCTAGTTTTAGATATAGGTGTAATATATGTTTAAGGAAATTTGGAGATGTTTTTGAAATGCGCGAACATAAAAAATCTCATTATGGAAAAAATTCTGCGACACAAGACAGTGGTGTACAGTCGATAGTAGAGGAGGTTTCAGCGCGGGAAAATTCTGTTCCCGAAACGAACTCTGATGTTTTAGTTGATAAGGTTCAAGAAACTGTTTCCGAATCTTTACGATGCGATATTTGCGATGATATCTTTGAAAGCGCTGATTCATATTTAGAACACTCTCAATTTCACGAAAAACCTAAATCACCTGATTCAGATATCGAAATTTGCGTAAATACTAAAGATTCTGCAGAAACCAATGTTTCCTCTCAAATTGAAAGTACTAGTCATTTACTACACATTCTGGAAGACGATACGAATTTAAATGAAAACCAAGACGAGTTGATTGTTAATGATTGCGCCGAAGAATTTAaacctaaaatttttgttaaaaaccttCAGGATTTGATGCCGACTAAATCGAACGACCAGGAAAAACCGAAAAGTATatttagaaagaaaattttaaaatgcgacGATTGTTCGTATGGAAACGAGAACTTATACTCGACAAACTTTGAGGCAGTGCCAAATGCGAGTACCGAAGATTTAACGATCAGCGCGAAATATTTGTTAACCTTGACAAAGCCGTCTACTTTATCTGACGTTGGTTTACTCGTAAACGGGGACGATCAACTTAACGATACCGATCGAGAGTTGTTAAATTTGTTAGCTACGGAAGACGATTGCTCCGACATTCTACGTAACATTGCGAGTAAtgagaattttgaaaatttaattagcgACGAAGCTGCTTTTGAAGCAGACGCTGTAATCGCTAGTTTTACAAATCTTCCCCACGTACGCgtgaaagaaaagaaagtgGGAACTTTTAAATGCGACCATTGCGAAAAATTGTGTACTACAAAAAAGCTGTTAAAGTATCATCTTATGTCCCACTTTGGCATCCGTGAACATTCTTGTAGCGATTgtggaaaaacttttaaacacaaGTATGAAGTTTCCGTACATAAATTATCTCACGCAAAACCAAGCTTCCAGTGCGATATTTGCtccaaaatgtttgttcataaaTCTCATCTAACGACTCATATAAGAAAACATACTGGTGAATATATTACGTATTGTGGCGAGTGCGGTAAAGGTTTTTTTACGCAAGCTTCTTATACATATCATCTAAATAATCATCACCAGAAATTGCAACACGTGTGTGATAAGTGCGGAGCTAGGCTTTCATCAAATTCGTCTTTAAAAGAGCATTTGCTTACTCATGACGCGAATTACGGACAGGAGAGGTCGCACGTTTGTGATTTGTGCGGGAAAACTTATTTAAACGGTAGAAATTTGCGAAATCACTTAAAGACTCATCGAGATGATAATTATCACGATTGTCACGTTTGTGGGAAAAAATTGAGCAGTAAAAAAGGGTTgcaaatacacttaaaaatgCATATCGGAGACAAGAGCTTTGTTTGCGAGTTTTGCAGTAAAGGCTTTATATCTAAAGATTATCTGACCGTTCATCAACGTATTCATACTGGGGATAGACCGTTTAGGTGCGATCTTTGCGGTAAATGTTTTACTCAGAAATCTTCGTTAAATGTTCACATCAGAAGCCACACTGGTGAGCGACCGTTTAAATGTCATTGcggaaaaagttttattacaaagACTCATTTAGCTGCGCATAATAAAACACACGACATTAGTAATATCGAGTTTGCTTATGTACCGCAAGCGATTTTGTTTGTAAAATTCGAAACCATTTGGAACAACGAAATACCAGAATGGTCCGATGATGAAATTAAACCTAATTTGAAAGAAGATGGCACGATTTCGTTATTTAAACGCGAAATTATGTGTAAATGTAATATCTGTAATAAGGTACTAAAGTTTCCGGAAACTTTCGATAAACATATCAAGTCTCATGAGAATCTTCAACCTGGGACGGAAGTTACGTTTAAGCAGCAACAATTAGAATCGTGTAATTGCAAAGTTTGTGGAAAAACTATTACTTTTCCCGATAGCTTCAGTAAGCATATGCAAGAGCATGCGCGAAATTCGGAAGAATTAGCGATTTCGTCGTTGAAAAATGGCGATAGAGTACGGTTTGGTGGGTACTCGGTTTTGTGTGGCATTTGCGATTTGGTTTTTTATACAAGACCCGATTTTATTCGTCATATTAATACCATCCACAAAAAGACTTATCGTTGCGATATTTGCAACGTGTGCTGTGGCAATTACATAAGTTTTAGCTTACACAAGCGTTTACATAATCGTAACAAAAGAAATGCCGAAACAACGTATCGGTGCGAAGAGTGCGACATTCAATTTGCCTGTTTGAGCGATTTACGTAATCATTTGAAGATTCATCCTAAGACGAATCGTAACGTCGACTTTAGTTGTGACGTTTGTAAAAAAGTCCTATCATCTGCTGCTAGTCTTCGAGTTCATAAACAGATTCACACACAAAATCCGAATAAATGTACATATTGTCGAAAATCTGTTTCTAAACAGGGCTTTTTGAAGCGACACATGAAGAAGCATTTGGTTAACGGAAACTTAAAACCTTTTTCGTGCAAGGATTGCAAAAAAACCTTTGCGGAAAAGGACGAATTAGCCGCTCACCGACGGTTCCATAGattataa
Protein Sequence
MAQYFISKPVIAKVDRVTPSTPTFEDKIKEKLCTLSKSQYSCNQCKETFVNELQMKRHKMVHLIKNKSQLDGYKQSYRCYICRKAYAKRDALWSHIRQHSKHLQHKCKDCNVVFETSNGFQAHKTECTKRDNNVSAPVIPVPNSESSFRYRCNICLKKFEDVFEMREHKESHYEKNSATQDGGEPTIVEEVLVREDSVPETSSDVLVDKVQAHQTESTKRDNVSAPVPNPESSFRYRCSICLKKFGDVFEMREHKESHGNNSATQDSGEQTIDEVLVRENSVPETSSDVLVDKVQAHKTESTKRDNNVSAPVIPVPNPESSFRYRCNICLRKFGDVFEMREHKKSHYGKNSATQDSGVQSIVEEVSARENSVPETNSDVLVDKVQETVSESLRCDICDDIFESADSYLEHSQFHEKPKSPDSDIEICVNTKDSAETNVSSQIESTSHLLHILEDDTNLNENQDELIVNDCAEEFKPKIFVKNLQDLMPTKSNDQEKPKSIFRKKILKCDDCSYGNENLYSTNFEAVPNASTEDLTISAKYLLTLTKPSTLSDVGLLVNGDDQLNDTDRELLNLLATEDDCSDILRNIASNENFENLISDEAAFEADAVIASFTNLPHVRVKEKKVGTFKCDHCEKLCTTKKLLKYHLMSHFGIREHSCSDCGKTFKHKYEVSVHKLSHAKPSFQCDICSKMFVHKSHLTTHIRKHTGEYITYCGECGKGFFTQASYTYHLNNHHQKLQHVCDKCGARLSSNSSLKEHLLTHDANYGQERSHVCDLCGKTYLNGRNLRNHLKTHRDDNYHDCHVCGKKLSSKKGLQIHLKMHIGDKSFVCEFCSKGFISKDYLTVHQRIHTGDRPFRCDLCGKCFTQKSSLNVHIRSHTGERPFKCHCGKSFITKTHLAAHNKTHDISNIEFAYVPQAILFVKFETIWNNEIPEWSDDEIKPNLKEDGTISLFKREIMCKCNICNKVLKFPETFDKHIKSHENLQPGTEVTFKQQQLESCNCKVCGKTITFPDSFSKHMQEHARNSEELAISSLKNGDRVRFGGYSVLCGICDLVFYTRPDFIRHINTIHKKTYRCDICNVCCGNYISFSLHKRLHNRNKRNAETTYRCEECDIQFACLSDLRNHLKIHPKTNRNVDFSCDVCKKVLSSAASLRVHKQIHTQNPNKCTYCRKSVSKQGFLKRHMKKHLVNGNLKPFSCKDCKKTFAEKDELAAHRRFHRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-