Alei029485.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069432.1:272394586-272396728[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.2 48 7.3 4.0 1 23 143 165 143 165 0.96
2 20 0.01 2.5 11.4 3.9 1 23 171 193 171 193 0.98
3 20 0.093 22 8.4 3.4 1 23 199 221 199 221 0.97
4 20 0.00079 0.19 14.9 6.1 1 23 227 249 227 249 0.98
5 20 3.9e-05 0.0094 19.0 1.8 1 23 255 277 255 277 0.98
6 20 0.00087 0.21 14.8 3.1 1 23 283 305 283 305 0.99
7 20 5.3e-05 0.013 18.6 0.7 1 23 310 332 310 332 0.98
8 20 9.2e-05 0.022 17.8 0.5 1 23 338 360 338 360 0.95
9 20 9.9e-05 0.024 17.7 4.1 1 23 366 388 366 388 0.98
10 20 1.4e-05 0.0033 20.4 0.7 1 23 394 416 394 416 0.97
11 20 0.0054 1.3 12.3 0.2 1 23 422 444 422 444 0.98
12 20 6.5e-05 0.016 18.3 0.3 1 23 450 472 450 472 0.98
13 20 0.00033 0.079 16.1 1.2 1 23 478 500 478 500 0.97
14 20 5.8e-06 0.0014 21.6 0.4 1 23 506 528 506 528 0.98
15 20 2.2e-05 0.0053 19.8 0.6 1 23 534 556 534 556 0.97
16 20 0.0025 0.6 13.3 4.1 1 23 562 584 562 584 0.98
17 20 1.5e-05 0.0036 20.3 1.2 1 23 590 612 590 612 0.98
18 20 8.7e-05 0.021 17.9 1.7 1 23 618 640 618 640 0.98
19 20 0.0001 0.025 17.6 2.9 1 23 646 668 646 668 0.98
20 20 1.6e-07 3.7e-05 26.5 0.4 1 23 674 696 674 696 0.98

Sequence Information

Coding Sequence
ATGGGTgaaaatacaacaaacacttgtcgaatttgtttacaaGAAATAATTGAAACGGAGCAGTATCGCTTTCTAAACAACGACAATGAGTTAGAGTTACATTCGAAGTTGCTAGAGTTGTTGCCAGAAATCGACTTGAACATCACATCTAACCCAATTATTTGTAACCGATGTATGGGAACGATTGaggaaatacataaatttaaacaactttgcATGCAAACCGAATTGACGGTAAGGAAGTTGCGTCGACCAATACCCGTTCGTGATGTCTTAATTCATGTTAAAAAAGAAGTAATCAAAGATGAGTTAGTTGCTGATAATATTAAAGAGGAACCATCAGACTTGCAAATCATCAAGGATGAATACTTGCAAGTTGATACAAATGTGCCTAGATGTATTGAGAATTCTTTAGAtatcgaattttattattgccaTGATTGTGACTTCAACACTAATAAGAAAACGAATTTGATTTTCCACCTAAAAGAACACAGGATTAACGGGTCATTTCAGTGCAATGTGTGTAATTATAACTGCAAAGAAAAGTTGTCGTTTAAAGAGCATTTACGGATACACACTGGGGAGAAGCCATATAAATGCACTGAGTGTGATTATGAAACAATGCAGAGATGTACACTTCAGCTTCACTCTTTAAGGCACACCAACAAGAATCTATACCATTGCCACGATTGTAATTATAGTACCAATCAAAAATCGACTTTGATCCATCACGTGATGGTTCATcgaaatattaaacaatttaaatgcgaTTTGTGTAAGTATTCTACCGATAGTAAGAGCTTATTAAAAAGGCACATGTTATTGCACAATGCCTTAAAAGTGTACAAATGTGACCAATGTGATTTTCAAAGTGCTCATAAAACAGATTTAAACACTCACATGACGACTCACAATTTGAAACCgtttgtttgtgaaacttgtgggttTTCTACTCGAAGAAAGTGGGACTTAAAACAACACGCGATGACTCACTACTCCataaaaccgtttgtttgcgGAATTTGTGGGTTTTCTACTCGAAGAAAatcctttttaaaaaaacacgtaatAGCTCACAGCTCGTTAAAACCATTTGTTTGCGATACTTGTGGGTACTCCGCACGACAAAAGTGCCATTTAAAAAGACACATGTTGATTCACAGTTCGataaaaccgtttgtttgcgaAACTTGTGGGTACTCGAGTCGTCGtcagaataatttaaaaaaacacgcgATGATTCATAGTTCagtaaaaccgtttgtttgcgaAACTTGTGGGTTTTCTACTTCAGAAAAGTGGGTTTTAAAACAACACGCAATGACTCACAGCTCAataaaaccgtttgtttgcgaAATTTGTGGGTTTTCTACTCGAAGAAAGTGGCTTTTAAAACAACACGCGATAACTCACAACGTGATAAAACAGTTTGTTTGCGACACTTGTGGGTTTTCTACTCAAAGAAAGTCTGCTTTAAAACAACATACGATGAATCACAGTTCGataaaaccgtttgtttgcgaAATTTGTGGGCACTCTGCTCGACAAAAGGCTCAGTTAAACAGACACATGCTAATTCACAGTTCAGTAAAACCATTCGTTTGCGAAATTTGTGGGTACTCAAGTCGACATCAGGATACTTTAAAAAGGCACGCTATCATTCACAGCTCagtaaaaccgtttgtttgcgaAACTTGTGGGTACTCTAGTCGACTTGAGTGTCATTTAAAGACGCACATGCTGACTCACAGTTCGGAAAAACCATTTGTTTGCGGAATTTGTTGGTACTCGACTCGACAAAAAAGTCATTTAAGGATACATATGGTGACTCACAGTTCGGTAAAACCATTTGTTTGTGAAATTTGTGGGTTCTCTACTTCATATCATTCGTCTTTAAAGGGACATATGACGACTCACAGTTCGGCAAAACCATTTGTTTGTGACACTTGTGGGTTTGCCACTCGACATGCGGGGCATCTAAGAAAACACGTTAAAACTCACACTTTGGCAAATCCGTTTGTTTGCGAAATTTGTGGCTACTCGGCTCGGCGAAAGAGCAATTTAACAAGACACATGGCCACTCACAAGTAA
Protein Sequence
MGENTTNTCRICLQEIIETEQYRFLNNDNELELHSKLLELLPEIDLNITSNPIICNRCMGTIEEIHKFKQLCMQTELTVRKLRRPIPVRDVLIHVKKEVIKDELVADNIKEEPSDLQIIKDEYLQVDTNVPRCIENSLDIEFYYCHDCDFNTNKKTNLIFHLKEHRINGSFQCNVCNYNCKEKLSFKEHLRIHTGEKPYKCTECDYETMQRCTLQLHSLRHTNKNLYHCHDCNYSTNQKSTLIHHVMVHRNIKQFKCDLCKYSTDSKSLLKRHMLLHNALKVYKCDQCDFQSAHKTDLNTHMTTHNLKPFVCETCGFSTRRKWDLKQHAMTHYSIKPFVCGICGFSTRRKSFLKKHVIAHSSLKPFVCDTCGYSARQKCHLKRHMLIHSSIKPFVCETCGYSSRRQNNLKKHAMIHSSVKPFVCETCGFSTSEKWVLKQHAMTHSSIKPFVCEICGFSTRRKWLLKQHAITHNVIKQFVCDTCGFSTQRKSALKQHTMNHSSIKPFVCEICGHSARQKAQLNRHMLIHSSVKPFVCEICGYSSRHQDTLKRHAIIHSSVKPFVCETCGYSSRLECHLKTHMLTHSSEKPFVCGICWYSTRQKSHLRIHMVTHSSVKPFVCEICGFSTSYHSSLKGHMTTHSSAKPFVCDTCGFATRHAGHLRKHVKTHTLANPFVCEICGYSARRKSNLTRHMATHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-