Alei029512.2
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:272498917-272501066[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.4e-05 0.0058 19.6 2.5 1 23 165 187 165 187 0.98 2 19 0.026 6.3 10.1 1.1 1 23 193 215 193 215 0.92 3 19 5.2e-06 0.0012 21.7 1.2 1 23 221 243 221 243 0.98 4 19 4e-05 0.0097 18.9 0.5 1 23 249 271 249 271 0.97 5 19 4.1e-05 0.0099 18.9 1.9 1 23 277 299 277 299 0.98 6 19 3.1e-05 0.0075 19.3 1.0 1 23 305 327 305 327 0.98 7 19 8.6e-05 0.021 17.9 6.0 1 23 333 355 333 355 0.98 8 19 0.0013 0.32 14.1 2.4 1 23 361 383 361 383 0.98 9 19 4.4e-06 0.0011 22.0 1.1 1 23 389 411 389 411 0.98 10 19 4.9e-06 0.0012 21.8 0.6 1 23 417 439 417 439 0.97 11 19 1.5e-05 0.0035 20.3 0.8 1 23 445 467 445 467 0.98 12 19 0.00048 0.12 15.6 5.6 1 23 473 495 473 495 0.97 13 19 0.0016 0.38 13.9 2.8 1 23 501 523 501 523 0.98 14 19 0.00013 0.03 17.4 4.3 1 23 529 551 529 551 0.97 15 19 0.0016 0.38 13.9 1.0 1 23 557 579 557 579 0.98 16 19 8e-05 0.019 18.0 3.7 1 23 585 607 585 607 0.98 17 19 0.00077 0.18 14.9 1.3 1 23 613 635 613 635 0.97 18 19 0.00026 0.062 16.4 0.3 1 23 641 663 641 663 0.98 19 19 1.1e-05 0.0027 20.7 3.2 1 23 669 691 669 691 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAAATACAACATTCGCTTGTCGTATTTGCTTACAAGAAATTATAGAAACGGAACAGTACTACTGTCTAACCAACGATAATGAGTTAGAACTACAATCGAAATTGTTAGAGTTGTTGCCAGAAATCgaCATAAACATCACACCTAACCCAATTGTTTGTGACCGATGCAAGATAACGATTGAGGAAATACATGAATTCAAACAATTGTGCCTGCAAAGGATATCGACTGTAAGGAACTTACCAGGAGCAATACCAGTTAATGATgtcacaaattattttaaaaaagaaataatcaaaaaagagTTCATTGATGGTAATATTAAAATCGAACTTTTAGATTTACAAAGTGCCAACAATCACTGCTTGGAAAGCAACACAGATATGCCTGTACGTATAGAGAAATGTAAATTTGATCAAAGTGGCTTTAACAGTGCAGATGAGAATACCTTCAACTGGCACATGATGACTTATAACTTGGTGAAACCGTTTGTTTGTGGAACTTGTAGCTTTTCCACTCGACGTAAGTCATCTTTAAAGAAACACATGCTAACTCATAGCTTggtaaaaccgtttgtttgtgGAACTTGTGGTTTTTCTACGCAACATAAATGGGGTTTAAAGTCACACATGTGGACTCATAGCTCGGTAAAACCATTTGTTTGCGAAACTTGTGGATTATCTACTCGACATAAGTCAGCTTTAAAGATCCACATGCTGACTCATAGCTTGGTAAAGCCGTTTGTTTGCGAAACTTGTGATTTTTCAGCTCGAAATAAGTCAGATTTAAAGAAACACATGGTGATTCATAGCTcggtaaaaccgtttgtttgcgaAAGTTGTGGGTTTTCTACTCGCTATAagtcatatttaaaaacacatatgctGACTCATAGCTCGACCAAACCGTTTGTCTGCGAAACTTGTGGGTATTCTACGCAATATAAGTCAACTTTAAAGATACACATGCTGACTCATAGCTCGGTAAAACCGTTTGCTTGCGAATATTGTGGGTATTGTACGCATCGCAAGTcagttttaaagaaacacaTGCGGACTCATAGTTCagtaaaaccgtttgtttgcgaAACTTGCGGGTTTGCTACTCGATATcaaacatgtttaaatacaCACTTGATGACTCATAGCTCGGTAAAACCATTTGTTTGCGAAACTTGCGGGTTATCTACTCGACATAAGTCAGCTTTAAAGGTACACATGCTTACTCACAGCTTGGTAAAACCGTTTATTTGCGAAATTTGTGGTTTTTCATCTCGATATAAGTCTGATTTAAAGAAACACATGCTGATTCATAGCTcggtaaaaccgtttgtttgcgaAATTTGTGGGTTATCTACTCGCTATAAgtcatatttaagaaaacatagGCTGATTCATAGCACGGTAAAACCGTTTGCTTGCGAAAGTTGTGGGTATTGCACGTATCATAAGTcagttttaaagaaacacaTGCGGACTCATAGTTCagtaaaaccgtttgtttgcgaAACTTGTGGGTTTGCTACTCGATACAAGACGTGTTTAAATACACACTTGATGACTCATAGTtcagtaaaacagtttttttgcgAAACTTGTGGGTTTTCTACGCATCAAAAGTCAAACTTAAAGACACACATGCTGACTCATAGTTCAGGAAAACCGTTTGTTTGTGGAACTTGTGGGTTTGCTACTGGACACCAGACTTATTTAAATACACACTTGATGACTCATAGCTcggtaaaaccgtttgtttgcgaGACTTGTGAATTTTCTACGCATCGAAAGTCAAATTTAACGAAACACATGCTGACTCATAGTTCTGTAAAACAGTTTGTTTGCGAAACTTGTGGGTTTTCTGCGCATCAAAAGTCATCTTTAAAGAAACACGTGCTTATTCATAGTTCGGTAAAACCGTATGTTTGCGAAATTTGTGGGTTTGCTACTCGATACCAGACGTATTTAAGTACACACTTGATTACTCATAGCGCgctaaaaccgtttgtttgcgaAACTTGTGGTTTTTCTACGCGACATAAATCGAGTTTAAAGTCACACATGCTGACTCATCGCTTGGCAAAACCGTTTGTTTGCTAA
- Protein Sequence
- MDENTTFACRICLQEIIETEQYYCLTNDNELELQSKLLELLPEIDINITPNPIVCDRCKITIEEIHEFKQLCLQRISTVRNLPGAIPVNDVTNYFKKEIIKKEFIDGNIKIELLDLQSANNHCLESNTDMPVRIEKCKFDQSGFNSADENTFNWHMMTYNLVKPFVCGTCSFSTRRKSSLKKHMLTHSLVKPFVCGTCGFSTQHKWGLKSHMWTHSSVKPFVCETCGLSTRHKSALKIHMLTHSLVKPFVCETCDFSARNKSDLKKHMVIHSSVKPFVCESCGFSTRYKSYLKTHMLTHSSTKPFVCETCGYSTQYKSTLKIHMLTHSSVKPFACEYCGYCTHRKSVLKKHMRTHSSVKPFVCETCGFATRYQTCLNTHLMTHSSVKPFVCETCGLSTRHKSALKVHMLTHSLVKPFICEICGFSSRYKSDLKKHMLIHSSVKPFVCEICGLSTRYKSYLRKHRLIHSTVKPFACESCGYCTYHKSVLKKHMRTHSSVKPFVCETCGFATRYKTCLNTHLMTHSSVKQFFCETCGFSTHQKSNLKTHMLTHSSGKPFVCGTCGFATGHQTYLNTHLMTHSSVKPFVCETCEFSTHRKSNLTKHMLTHSSVKQFVCETCGFSAHQKSSLKKHVLIHSSVKPYVCEICGFATRYQTYLSTHLITHSALKPFVCETCGFSTRHKSSLKSHMLTHRLAKPFVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -