Alei075064.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:105937964-105940268[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.013 3.2 11.0 0.6 1 21 125 145 125 146 0.94
2 22 0.002 0.47 13.6 4.4 1 23 165 187 165 187 0.99
3 22 0.00018 0.043 16.9 2.1 1 23 193 215 193 215 0.98
4 22 3.6e-06 0.00086 22.2 1.0 1 23 221 243 221 243 0.99
5 22 9.1e-06 0.0022 21.0 2.3 1 23 249 271 249 271 0.98
6 22 0.00022 0.052 16.6 6.7 1 23 277 299 277 299 0.99
7 22 0.014 3.2 11.0 6.7 1 23 305 327 305 327 0.98
8 22 0.0039 0.92 12.7 8.7 1 23 333 355 333 355 0.98
9 22 0.0011 0.27 14.4 6.4 1 23 361 383 361 383 0.99
10 22 0.00011 0.027 17.6 3.8 1 23 389 411 389 411 0.98
11 22 7.8e-07 0.00019 24.3 5.0 1 23 417 439 417 439 0.99
12 22 5.4e-05 0.013 18.6 7.9 1 23 445 467 445 467 0.99
13 22 3.8e-06 0.00092 22.2 4.2 1 23 473 495 473 495 0.99
14 22 0.0021 0.49 13.6 3.4 1 23 501 523 501 523 0.99
15 22 4.7e-06 0.0011 21.9 4.5 1 23 529 551 529 551 0.99
16 22 0.0015 0.36 14.0 3.0 1 23 557 579 557 579 0.99
17 22 3.4e-05 0.0081 19.2 7.1 1 23 585 607 585 607 0.98
18 22 0.00019 0.045 16.8 4.7 1 23 613 635 613 635 0.99
19 22 9.5e-05 0.023 17.8 1.9 1 23 641 663 641 663 0.98
20 22 5.5e-06 0.0013 21.7 4.1 1 23 669 691 669 691 0.98
21 22 1.8e-05 0.0043 20.0 3.6 1 23 697 719 697 719 0.99
22 22 0.00014 0.034 17.2 1.8 1 23 725 747 725 747 0.98

Sequence Information

Coding Sequence
ATGGaggaaaaaacaacaaaagtttgtcggatttgtttaatagaattagTAGAAACCGGGCagtattattttctaaacaacaaCGAGTTAATGCTACAATCAAAGTTGTTGTACTTTCtaccagaaattGATCTCAATGCCACACCAAACCCGGTTGTTTGTAACGGATGTATGATTACAATTGAAGAAATctatgaatttaagcaactgtgtaTACAAACTGAAACTACTATAAGGAACTTCAAACAAGTGGCAATTAAAGAAGAGTTTGATAATATTAAGGTTGAAGACAATCGAATGATCAGGGATGACTGTATGGAAATCAATACCAATGTGGCGGTATGCAACGAAGAACTTTCAAAAGCAGAactgtattattgctacaactgcgACTTCAACACCAACAAGAAGGCAAATTTGATTCGACATCTAATTCGTGGAAAGCAAAAAACACATATGTGTAAAGACAAGAACGTGAAACATTACAATTGCTATaagtgcaatatatgtgattgtTATAGTACCACCAAGACCGTTTTAAAAAGgcatataaataaacacgctaatgaaaaaccatttatgtgtaatatttgtgattactcAAGTGATCGATTGGGAACTTTGAAAACTCATATGCAtacacacactggtgaaaaaccatttcaatgcaatatatgtgattactcgaGCAACCAGTTGGGAAATTTGAAAACAcatatacgtaagcacactggggaaaaaccatttcaatgtagcatatgtgattactgcagtaccaatGTATCAGATTTAAAAAGACATATACGTCTTCATACTGgggaaaaattatttaagtgcaatatttgtgattactcGTGTAACCGATTGGGATATTTGAAAACTCATATGTGTAAGCAttctggtgaaaaaccatttcaatgtaATGTATGTAATCACCGTACTATCAGCATGGCgcatttaaaaaggcatatacATAAACACACTGTTGAAAAACTATttcaatgcaatatatgtgatcactGCACTACCACCAAGACGGCTTTAGAAAGGCATAAGTGTAAGCACAcaggtgaaaaaccatttaaatgtaatgtcTGTAATTACTGTACTATCAGCATGGCGCATTTAAAAAGGCATACACGTCgccatactggtgaaaaaccatttcaatgcagTATTTGTAGTTACTCATGCAATCAATCAGgatatttaaaaactcatatgcttaagcacactggcgaaaaaccatttcaatgtaatatatgtgattactgcactaCCACCAAGTCGTACTTAGaaaggcatatgcgtaagcacactggtgaaaaaccatttaaatgcaatatttgtaaTTACTCATGCAATCAATCGTCATATTTAAAAACTCACATGTGTACACACACTGGTGtaaaaccatttcaatgcaaaatatgtgattactgcagtactacCAAGTCagctttaaaaacgcatattcgtaggcacactggtgaaaaaccatttaaatgcaatatttgtgattactcTAGTGGCGAATTAAGGTGTTTAAGAactcatatgcgtaagcacacgggagaaaaaccatttaaatgcaaaatatgtgattactgcagtattaCCAAATCATCTTTAAAAACCCATATTCGTACCCACGCAATTGGAAAAACTTTTcaatgcaatatttgtgattactcGAGCGGCGAATTGAGATGCTTAAAAACTCATATGCGTagacacactggtgaaaaaccatttcattgcaaaatatgtgattactgcagtactacCAAGTCctctttaaaaacgcatattcGTAcccacactggtgaaaaaccatttcaatgcaatatatgtgattactgcactaCCACCAAAACGGGTTTAGACAAGCATaggcgtaagcacactggtgaaaagccatttaaatgcaatatttgtgattactcTAGCAACAATTCGGgatatttaaaaactcataGACTAAAGCATACCGGTGAAAAACCGTttcaatgcaatatatgtgattactgcactaCCACCAAGTcgtctttaaaaatgcatattcgtaaccacactggtgaaaaaccatttaaatgcaatatatgtgattactgtagtaccaACATCgcgaatttaaaaaagcatttgcgtaaacacactggtgaaaaaccatttaaatgtaatgtatgTAATTACCGTACTAGCTACGCGGGGAGTTTAAATAGGCATAAACGTCTGCATACTGCtaacatttaa
Protein Sequence
MEEKTTKVCRICLIELVETGQYYFLNNNELMLQSKLLYFLPEIDLNATPNPVVCNGCMITIEEIYEFKQLCIQTETTIRNFKQVAIKEEFDNIKVEDNRMIRDDCMEINTNVAVCNEELSKAELYYCYNCDFNTNKKANLIRHLIRGKQKTHMCKDKNVKHYNCYKCNICDCYSTTKTVLKRHINKHANEKPFMCNICDYSSDRLGTLKTHMHTHTGEKPFQCNICDYSSNQLGNLKTHIRKHTGEKPFQCSICDYCSTNVSDLKRHIRLHTGEKLFKCNICDYSCNRLGYLKTHMCKHSGEKPFQCNVCNHRTISMAHLKRHIHKHTVEKLFQCNICDHCTTTKTALERHKCKHTGEKPFKCNVCNYCTISMAHLKRHTRRHTGEKPFQCSICSYSCNQSGYLKTHMLKHTGEKPFQCNICDYCTTTKSYLERHMRKHTGEKPFKCNICNYSCNQSSYLKTHMCTHTGVKPFQCKICDYCSTTKSALKTHIRRHTGEKPFKCNICDYSSGELRCLRTHMRKHTGEKPFKCKICDYCSITKSSLKTHIRTHAIGKTFQCNICDYSSGELRCLKTHMRRHTGEKPFHCKICDYCSTTKSSLKTHIRTHTGEKPFQCNICDYCTTTKTGLDKHRRKHTGEKPFKCNICDYSSNNSGYLKTHRLKHTGEKPFQCNICDYCTTTKSSLKMHIRNHTGEKPFKCNICDYCSTNIANLKKHLRKHTGEKPFKCNVCNYRTSYAGSLNRHKRLHTANI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-