Alei074952.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069435.1:105427048-105429357[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0035 0.84 12.8 0.2 2 23 37 58 37 58 0.95
2 20 0.00033 0.079 16.1 3.1 1 23 64 86 64 86 0.98
3 20 2.4e-07 5.7e-05 26.0 1.2 1 23 92 114 92 114 0.98
4 20 0.00036 0.085 16.0 0.6 1 23 124 146 124 146 0.94
5 20 2e-06 0.00047 23.1 2.6 1 23 152 174 152 174 0.98
6 20 3.7e-06 0.00089 22.2 0.9 1 23 180 202 180 202 0.98
7 20 0.0064 1.5 12.0 3.3 2 23 207 228 206 228 0.97
8 20 6.8e-05 0.016 18.2 1.6 1 23 381 403 381 403 0.98
9 20 1.1e-06 0.00026 23.9 2.3 1 23 409 431 409 431 0.98
10 20 3e-06 0.00072 22.5 0.8 1 23 437 459 437 459 0.99
11 20 0.0033 0.78 12.9 1.5 1 23 465 487 465 487 0.98
12 20 2e-06 0.00049 23.0 2.4 2 23 502 523 502 523 0.98
13 20 4.7e-05 0.011 18.7 3.1 1 23 560 582 560 582 0.98
14 20 1.2e-05 0.0028 20.6 1.5 1 23 588 610 588 610 0.99
15 20 4.5e-05 0.011 18.8 0.8 1 23 616 638 616 638 0.98
16 20 0.00046 0.11 15.6 1.7 1 23 644 666 644 666 0.98
17 20 3.8e-05 0.0091 19.0 2.2 2 23 673 694 672 694 0.98
18 20 8e-05 0.019 18.0 5.7 1 23 694 716 694 716 0.98
19 20 0.00048 0.11 15.6 3.7 1 23 722 744 722 744 0.97
20 20 1.5 3.7e+02 4.5 0.1 5 20 751 766 750 768 0.90

Sequence Information

Coding Sequence
ATGAACGAAGTAGTTAAACCCGAAAATGGCACTGACCCAGAACGTCGTAACAATTCTTCTTCTATTAGAACCGAAGCGTTAAATTGCATCAAATCTCGTCAGCCAGCCGAATGTAGgcaatgcaaaaaagtttttcctgGGCAAAGTCGCTTGGAACAACATTTGATAGCTCACAGTAATTTGCGCCCTTTTAAATGCACACAGTGTCCTAAAGCGTTCAAAGAATCACGGTGTTTAGAAATGCATTTGAAACTACATTCAGGTATTCGACCTTTTCAGTGTAATGATTGTGGGAAATACTTTACGACAAATTGGAATTTGAAACAGCATTTAGTAACACACAGAATAACTCAAGGTAATTTACGACCTTTTAAATGCACACAATGTTCCAAAGCATTTAAAGATGCTAGAGGTTTAAAGATGCATTCAGtcatacatttaaatttaaggcCATTTAAGTGTAACAAGTgtgataaagattttaaaacaaattggaaTTTAAAACAGCATTTAGACAGGCATAGAggaaaaaaaccatttaaatgtgaAGAATGTGATCGTTTCTTTGCTAGAAAAGGATCATTAAGACAGCATGTTATAAAACACTTTAAGGTCAAACAATGCATGTTATGTTCGAAGAAGTTTAAGACAGCATTTCGATTGACTCAACACGAAAAGACGCATACGAATCAAAGTACAGATACACAAAATGGAATCAAACAACCATCTACAACCACTTTCATCgatgttactaaaattaaagaagaatcAGAATTGAAGGATGATTACTCAACGTCATGCAAAGAATCATTAGGTCAACATGCAACCAATCAAGTAACAGATAAAATGAATATTGAAACCGAGATCATGTTTGAagaaattcaattaaaagaagaatttaaatcAGAATTGAATGAACAAGTAAGTCAGCAGGTTGTAGATAACACATTGAATCCTTTAAAAGAATGTACAATGAGCAAAGCAACAACAATGAAGAATGAGTTCAATATTGACGAATCTAGAACTACTACTAGCAACATCATGTTTGAGGAGGTTAAATTAGAAGAATTTACATCAGAGTGTGATAATTCCTCAATGCAAATCAGTACGGTAAACAACCCAGATCTTGGtgtatcgttatttaaatgtgtTCATTGCGACAAGGTATTTCCTTTTCGTAGTAGATTGAGAGATCATTTGATAATTCATAATGATTTACGTCCATTTAAGTGCACAATTTGTCCTAAGGCATTCAAAGCATCCAGCCATTTAAACAGACATTTAAAACTACATTCAAATGTAAGACCATTTCAGTGTAGCGTTTGTGACAAAAGCTTTGTAACGAGTTTTGATATTAAACAACACATGGCAACACACGGtgagaaaaaactttttaaatgtgATCAATGTGATGTCTCTTACTTTacaataaaatcatttaaagcACACGTAAAATCCCACAGCAATGCAGAGGGTGTGACTAAGACTACGATTAAATTAGCACAGTGCagttattgcaaaataaagttTAGGACAGCTTATCAATTGACTCGACATTTAAGGACACATAAAATCAACGAAACAATAGAGGCAAATGCTCAACAAGAACATGTAAAGATTAAGTCAGAATTAAACGCAAATTATTTAGAGcagaaattaattaacaacaccGAGTTGTTTGAATGCTTTCATTGCAAAAAGGTTTTTAGTTTGCGCAGTAAACTAGCAATACATTTAAGAAGTCACAGTAATTACCGTCCCTTCAGGTGTCGTATGTGTCCTAAAACTTATAAAGAAAGTAGTGCTTTAAACTCGCATTTGAAAACACATTCAACAGTACGGCCGTTTAAATGTGATCTTtgtgataaaaattttgtatttaacttAGATTTGAAACGGCATGTTGCAACACACGAAGATAAAAAACCGTTTCAATGCGAACAGTGTGATCGTTCTTATGTTAAGAGACAGTCGTTAAATATACACTTTCTGAAGCACACGGGTAATCAACCAGTGCAGTGTAGTTTGTGTACAAGAAAGTTTAAGACAAAGTACGAGTTGGATAACCATATAAAGACGCATAAATGTAATACttgtaataaatactttaaacgaGGATACCACTTGAAGATTCACATTAACACACATACTATTGAAAAACCGCATATTTGCAAGATCTGTAATAGAACGTTCTATTTAAAGAcaagtttatttaatcatttgaaGATCCACAGTCAGAAGAAACGCGATAACTGTAAGTTGCGTACTAGTAGAAAAGGAAGTTTAACAGCACATGAAAAAGCACAATAG
Protein Sequence
MNEVVKPENGTDPERRNNSSSIRTEALNCIKSRQPAECRQCKKVFPGQSRLEQHLIAHSNLRPFKCTQCPKAFKESRCLEMHLKLHSGIRPFQCNDCGKYFTTNWNLKQHLVTHRITQGNLRPFKCTQCSKAFKDARGLKMHSVIHLNLRPFKCNKCDKDFKTNWNLKQHLDRHRGKKPFKCEECDRFFARKGSLRQHVIKHFKVKQCMLCSKKFKTAFRLTQHEKTHTNQSTDTQNGIKQPSTTTFIDVTKIKEESELKDDYSTSCKESLGQHATNQVTDKMNIETEIMFEEIQLKEEFKSELNEQVSQQVVDNTLNPLKECTMSKATTMKNEFNIDESRTTTSNIMFEEVKLEEFTSECDNSSMQISTVNNPDLGVSLFKCVHCDKVFPFRSRLRDHLIIHNDLRPFKCTICPKAFKASSHLNRHLKLHSNVRPFQCSVCDKSFVTSFDIKQHMATHGEKKLFKCDQCDVSYFTIKSFKAHVKSHSNAEGVTKTTIKLAQCSYCKIKFRTAYQLTRHLRTHKINETIEANAQQEHVKIKSELNANYLEQKLINNTELFECFHCKKVFSLRSKLAIHLRSHSNYRPFRCRMCPKTYKESSALNSHLKTHSTVRPFKCDLCDKNFVFNLDLKRHVATHEDKKPFQCEQCDRSYVKRQSLNIHFLKHTGNQPVQCSLCTRKFKTKYELDNHIKTHKCNTCNKYFKRGYHLKIHINTHTIEKPHICKICNRTFYLKTSLFNHLKIHSQKKRDNCKLRTSRKGSLTAHEKAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-