Alei029508.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aquatica leii
Gene Symbol
-
Assembly
GCA_035610365.1
Location
CM069432.1:272469695-272472641[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 2.7e-05 0.0064 19.5 2.4 1 23 165 187 165 187 0.98
2 28 0.039 9.3 9.6 2.9 1 23 193 215 193 215 0.98
3 28 7.1e-05 0.017 18.2 3.7 1 23 221 243 221 243 0.98
4 28 1.8e-05 0.0043 20.1 0.2 1 23 249 271 249 271 0.96
5 28 2.5e-06 0.00059 22.8 1.5 1 23 277 299 277 299 0.98
6 28 0.00049 0.12 15.5 0.2 1 23 305 327 305 327 0.96
7 28 8.5e-05 0.02 17.9 1.7 1 23 333 355 333 355 0.98
8 28 0.0021 0.51 13.5 4.3 1 23 361 383 361 383 0.98
9 28 1.7e-06 0.0004 23.3 2.0 1 23 389 411 389 411 0.98
10 28 0.013 3.1 11.1 1.3 1 23 421 443 421 443 0.96
11 28 7.1e-05 0.017 18.2 3.7 1 23 449 471 449 471 0.98
12 28 0.28 68 6.8 2.9 1 23 477 499 477 499 0.97
13 28 2.8e-05 0.0068 19.4 0.9 1 23 505 527 505 527 0.98
14 28 0.0019 0.45 13.7 1.9 1 23 533 555 533 555 0.98
15 28 0.00037 0.087 15.9 0.8 1 23 561 583 561 583 0.98
16 28 0.008 1.9 11.7 3.1 1 23 589 611 589 611 0.98
17 28 0.00085 0.2 14.8 2.8 1 23 617 639 617 639 0.97
18 28 0.0023 0.55 13.4 4.2 1 23 645 667 645 667 0.98
19 28 0.00037 0.088 15.9 0.7 1 23 673 695 673 695 0.96
20 28 0.0017 0.4 13.9 2.5 1 23 701 723 701 723 0.98
21 28 0.0016 0.38 13.9 3.7 1 23 729 751 729 751 0.98
22 28 0.018 4.3 10.6 5.1 1 23 757 779 757 779 0.98
23 28 0.00084 0.2 14.8 3.5 1 23 785 807 785 807 0.98
24 28 0.0015 0.37 14.0 2.8 1 23 813 835 813 835 0.98
25 28 0.037 8.9 9.6 3.9 1 23 841 863 841 863 0.98
26 28 0.00054 0.13 15.4 2.9 1 23 869 891 869 891 0.98
27 28 0.0023 0.55 13.4 4.2 1 23 897 919 897 919 0.98
28 28 0.003 0.71 13.1 5.9 1 23 925 947 925 947 0.98

Sequence Information

Coding Sequence
ATGGATCAAAATGCAATATTCACCTGTCGTATTTGTTTACAAGAAATTATAGAAACTGAGCAGTATTACCGTCTAACCAATGATAATGAGTTAAAGCTGCAATCGAATTTGTTAGAGTTGTTGCCAGAAATCGACTTAAACATGACACTTAACCCAATTATTTGTGACCGATGCAAGATAACAATCGAGGAAATACACAAATTCAAGCAACTGTGCCTGCAAACGGAAGCCACCATAAGGGACTTTCAAGGACTAATTTCAGTTAATGATGTTTCAActtctgttaaaaaagaaattgtcaaaGAAGAGTTCGTTGATGATAATATTAAAGTCGAACTTTTAGATTTACAAATTGTCAATGCTGACTGCTTGGAAATCAACACAGACATATCTGtatgtaaagaaaaatgtaaaagcgATCAATGTACTTTAAAGAATGCAGATAACAGTGCTTCCAATGCATACATGATGACTCACAGCTTGATGAAACCCTTTGTTTGCGAAACTTGTGAATTCTCGACTCGTACGAAGTCGTATTTAAAGAAACATATGCTGACTCATAGCTCGGTAAAACCATTTGTTTGCAAAACTTGTAGGTTTTCTACTCGCTATAGCCGCCGTTTAAAGATGCATATGCTGATTCATAGCTcggtaaaaccgtttgtttgtgaaacttgtgggttTTCTACTCACAATAAGTCGTATTTAAAGAAACATATGCTGACTCATAGCTTggtaaaaccgtttgtttgcgaAATTTGTGGGTACTCTACGTAttctaattcaaatttaaaggTACACTTGCTTGCTCATAGCTcggtaaaaccgtttgtttgtgaaacttgtggATTTTCTACTCGGAGAAAGCAGAACTTAAAGAGACACATGATGATTCATAGCTcggtaaaaccgtttgtttgcgaAACTTGTGGGTACTCTacgtatttaaattcaaatttaaaggTACACTTGCTTGCTCATAGCTcggtaaaaccgtttgtttgtgaaacttgtgAATTCTCGACTCAGACGAAGTcgtatttaaacaaacatatgCGGATTCATAGCTTGGTAAAACCATTCGTTTGCAAAACTTGTAGGTTCTCTACTCGCTATAGCGGCCATTTAAAGATGCATATGCTGACTCATAGCTcggtaaaaccgtttgtttgcgaAACTTGTGGGTTTTCTACTCGCCGTAAGTCGTCTTTAAAGAAACATATGCTGACTCATAGCTTGGTAAAACCTTTggtaaaaccgtttgtttgtgaaacttgtgggtACTCTACGTATTGTAATTCAAACTTAAAGGTACACTTGCTTGCTCATAGCTCagtaaaaccgtttgtttgtgaaacttgtgggttTTCTACTCACAATAAGTcttatttaaagaaacatatGCTGACTCATAGCTTAATAAAACCATTTGTTTGCGAAACTTGTGGGTTTTCTACTCTCTGTAAGTCGTCTTTAAAGCAACATATGCTGACTCATAGCTTGGTAAAACCATTTATTTGCGAAACTTGTGGGTTTTCTGTTCGCTTAAAGTCGTCTTTAAAGAGACACATGCTGACTCATAGCTTGGTAAAACCATTTATTTGCGAAACTTGTGGGTTTTCTGTTCGCTGTAAGTCGTCTTTAAAGGCACACATGCTGACTCATAGCGCGATAAAATCGTTTGTTTGCGAAACTTGTGGTTTTTCTACTCGGAGAAAGCAGCGCTTAAAGGAACACATGATCATTCATAGCTcggtaaaaccgtttgtttgcgaAACTTGTGGGTTCTCGACTCattttaagtcaattttacaGAGACATATGCGGTCTCATAGCTCGGTAAAACCATTTATTTGCAAAACTTGTGGTTTTTCTACTCCAAGAAAGCAGTGCTTAAAGAAACACATATTGATTCATAGCTcggtaaaaccgtttgtttgcgaGACTTGTGGGTTTTCTACTCAttataagtattatttaaagaaacatttgcTGACCCATAGCTTGGTAAAATCGTTTGTTTGCGAAACTTGTGGGTACTCTACGTATTATAATTCAAACTTCAAGGTACACTTGCTTGCTCATAGCTCGGTAAAATCGTTTGTTTGCGaaacttgtaatttttctaCTTACAATATGAGGTATTTAAAGAAACATATGCTGACTCATAGCTcggtaaaaccgtttgtttgcgaAAGTTGTGAGTTTTCTACTCACAATAAGACGAATTTAAAGAAACATATGCTGACTCATAGCTCGGTAAAAGCGTTTGTTTGCGAAACTTGTGGGTTTTCTACTCATTATAACTGTgatttaaagaaacatttgcTGACCCATAGCTTggtaaaaccgtttgtttgcgaAACTTGTGAGTATTCTACTCACGATAAGACGTATTTAAAGAAACATATGCTGACTCATAGCTTGGTAAAACTGTTTGTTTGCGAAACTTGTAAGTTTTCTACTCACAATAAGACTAATTTAAAGATACATATGCTCATTCATAGCTcggtaaaaccgtttgtttgcgaGACTTGTAAGTTTTCTACTCACAATATGAGGTATTTAAAGAAACATATGCTGATTCATAGCTcggtaaaaccgtttgtttgcgaAACTTGTGAGTTTTCTACTCACAATAAGACTAATTTAAAGAGACATATGCTGATTCATAGCTcggtaaaaccgtttgtttgcgaAACTTGTGGGTTTTCTACTCAttataagtattatttaaagaaacatttgcTGACCCATAGCTTGGTAAAACCATTTGTTTGCGAAACTTGTGAGTTTTCTACTCACGATAAGAAGCATTTAAAGAAACATATGCTGACTCATAACTCGGAAAAACCGTTTGTTGCGAAACTTGTGGGTTCTCTACTCAACGTAAGTTAA
Protein Sequence
MDQNAIFTCRICLQEIIETEQYYRLTNDNELKLQSNLLELLPEIDLNMTLNPIICDRCKITIEEIHKFKQLCLQTEATIRDFQGLISVNDVSTSVKKEIVKEEFVDDNIKVELLDLQIVNADCLEINTDISVCKEKCKSDQCTLKNADNSASNAYMMTHSLMKPFVCETCEFSTRTKSYLKKHMLTHSSVKPFVCKTCRFSTRYSRRLKMHMLIHSSVKPFVCETCGFSTHNKSYLKKHMLTHSLVKPFVCEICGYSTYSNSNLKVHLLAHSSVKPFVCETCGFSTRRKQNLKRHMMIHSSVKPFVCETCGYSTYLNSNLKVHLLAHSSVKPFVCETCEFSTQTKSYLNKHMRIHSLVKPFVCKTCRFSTRYSGHLKMHMLTHSSVKPFVCETCGFSTRRKSSLKKHMLTHSLVKPLVKPFVCETCGYSTYCNSNLKVHLLAHSSVKPFVCETCGFSTHNKSYLKKHMLTHSLIKPFVCETCGFSTLCKSSLKQHMLTHSLVKPFICETCGFSVRLKSSLKRHMLTHSLVKPFICETCGFSVRCKSSLKAHMLTHSAIKSFVCETCGFSTRRKQRLKEHMIIHSSVKPFVCETCGFSTHFKSILQRHMRSHSSVKPFICKTCGFSTPRKQCLKKHILIHSSVKPFVCETCGFSTHYKYYLKKHLLTHSLVKSFVCETCGYSTYYNSNFKVHLLAHSSVKSFVCETCNFSTYNMRYLKKHMLTHSSVKPFVCESCEFSTHNKTNLKKHMLTHSSVKAFVCETCGFSTHYNCDLKKHLLTHSLVKPFVCETCEYSTHDKTYLKKHMLTHSLVKLFVCETCKFSTHNKTNLKIHMLIHSSVKPFVCETCKFSTHNMRYLKKHMLIHSSVKPFVCETCEFSTHNKTNLKRHMLIHSSVKPFVCETCGFSTHYKYYLKKHLLTHSLVKPFVCETCEFSTHDKKHLKKHMLTHNSEKPFVAKLVGSLLNVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-