Basic Information

Insect: Aquatica leii
Gene Symbol: ham
Assembly: GCA_035610365.1
Location: CM069437.1:7710976-7712277[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.5e-05 0.071 15.8 0.1 17 41 227 248 212 250 0.85

2 3 2.6e-05 0.051 16.3 2.0 17 44 255 279 249 279 0.88

3 3 0.7 1.4e+03 2.1 1.6 14 41 281 305 278 307 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.5e-05	0.071	15.8	0.1	17	41	227	248	212	250	0.85
2	3	2.6e-05	0.051	16.3	2.0	17	44	255	279	249	279	0.88
3	3	0.7	1.4e+03	2.1	1.6	14	41	281	305	278	307	0.82

Sequence Information

Coding Sequence: ATGAGTGTGGTTGATACGGGCCTTCCGTGGCTTCGGTACCTTCCCCCGCTGCCTTTGAGTCGTCCATTAACGATGCGCGAGAAAGATTCATCACCACGTAAAATGCTGGTAGCAGCCGGAGGATACAGTTCACCAAAACAAGCGGCGGTGTACCCGTTATCGATACGGGTACCACCGGGAGACGACGTTCCTTTCGATTTGTCCCGCAACACGCGATCACCGGGTCCTCATATGTCACCAGCGGGTAGGCCACCGCCCGGTCCTCAAGACGTCGACGATCAACCTTTAGACCTACGAGTCGAGCACAAAAAATGCCGTCGACAACACCTAATCGAAGACGAAAACCGTAACATAATTTCGCCGCCGGGTAGCATCACCAGCGACAAAGAAGACGTTCCTGTTGAAGAGCACAAACTACAAATACCAAACTACCCGGTGCTTTTTCCACCTCAACCGATACATCCGATGATGCTGGAAGCGATGTATCGCACCGACAAAGTACCTAGACTGCCTTTATACCCAAACTCGCCTCCCGGTTACCCTCAACAAAGATACCCATTTTTGAGTCCTACTATGTTAAGTCCACCCGTAACACAAGTTCCTTTCGACATCCTCAGAAACCCAGCTGTGTCACAAGCGAAAGTTTTTGCCGACGCTACCGGAAAAATGAAAGATCGCTACGCTTGCAAATTCTGCGGAAAGGTCTTTCCTAGGTCGGCCAATTTGACTAGGCATTTGCGCACGCACACCGGAGAACAACCCTACAAGTGCAGGTACTGCGAGCGTTCGTTCAGCATTTCGAGTAATCTACAAAGACACGTGCGTAACATCCACAATAAGGAGAAGCCGTTTAAGTGTCCACTGTGCGAACGTTGTTTTGGTCAACAGACTAATTTAGATAGACATTTAAAGAAGCACGAATCCGATGGTCCTACTATTTTGGACGAGCGTAACATGCGTCGGAATTTATCGCGCGGACACGGCGAAGATTCATACTTCGAGGAGATACGCTCGTTTATGGGTAAAGTCACCGACGGGCGTATGCTTTCCCAAATACAAGCACCGAGACCTTTACCGAATTTCTCTTTATCACTGCCGAGTAAGTTCTACGATATACCCAAACAGGAGTCTCCCGAAGACGGTGGTAAAAGAGATTCGTCGTATTTTTCCGAAAAAGACAATTTTTCGTCGCGGTCTTCTACCAGTTCCGATTCGTCGATTAAAGAAGAAAACGGCGAAAATGTACCTCGGCAAGAAGAAGACGAAACGCATCGACGCTTATCGAACGATGTCAACACTTGA
Protein Sequence: MSVVDTGLPWLRYLPPLPLSRPLTMREKDSSPRKMLVAAGGYSSPKQAAVYPLSIRVPPGDDVPFDLSRNTRSPGPHMSPAGRPPPGPQDVDDQPLDLRVEHKKCRRQHLIEDENRNIISPPGSITSDKEDVPVEEHKLQIPNYPVLFPPQPIHPMMLEAMYRTDKVPRLPLYPNSPPGYPQQRYPFLSPTMLSPPVTQVPFDILRNPAVSQAKVFADATGKMKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHESDGPTILDERNMRRNLSRGHGEDSYFEEIRSFMGKVTDGRMLSQIQAPRPLPNFSLSLPSKFYDIPKQESPEDGGKRDSSYFSEKDNFSSRSSTSSDSSIKEENGENVPRQEEDETHRRLSNDVNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01284919;
90% Identity: iTF_00154041; iTF_00003173; iTF_00003912; iTF_00004203; iTF_00003319;
80% Identity: iTF_00154041;