Alei008520.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:69346573-69347979[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-06 0.00017 23.9 0.0 4 37 12 45 9 48 0.92
Sequence Information
- Coding Sequence
- ATGTCGAGTCAACGAAAAAAGTGGAGCAAACACAATATGGTAGAGGCTATTAAGACATGTAAAGAAAAGCGGATGGGATATAACAAAAGTTCGAGAACATTTGGAGTTCCACAATCTACCTTAGAGGGGTATGTCCAAATTGATAAGGAGCCTGAAGAAATTGTCATGGAAAAACTTGGAAGGAAACCAGTAATGCCAGAAAAATTGGAAAAGGAGTTGGTGAAGCATTGTTTGGAATTAGAACAACATTATTTTGGAGTTACAAGAAAAGATATTTGTAAACTAAGTTTTGACTTATGCAagagaaataatataaaaagccCATTCAATACATATAAAGAATGTGCAGGATCAAAATGGCTTGCTGGTTTTCTAAAACGAAATCCTAAATTATCTTTCCGAACGCCGCAAGGTATATCATATGCACGAGTAAAATCTTTTACTAAAGAAAATGTTGCAagcttttttgatatttatgaaCCACTATTAGAGAGAGTGAACAACGATCCTAGTCGTATTTTTAACTGCGACGAAACGGGCATTACGATAGTGCAACATAAGCATCAGAAAGTCATTGCAATGAAAGGAAAGAAACAAGTTGCGGCCCTCTCGTCTGCAGAACGAGGATCCCTTATGACAGTCGTTATGTGTTTTAGTGCAACGGGTTTGTATATACCTCCGTTAATAATTTTCCCACGGAAAAATATGAAACTAGAACTAATGAATGGCATGCCTCCTGGCTCCACCCATGCTTGCCACTTATCAGGCTGGATACAGCAAGAAATATTTGTACAGTGGTTAAGACATTTGATCAATCATGCAAACCCAACAAAGGATAATACAGCTGTTTTGGTCCTAGATAGCCACTACACTCACACCAGGAATCTAGAAGTCATAACTGtagcaaaagaaaataatgttcATATTGTGTGTTTACCGCcgcatttaactaataaaatgcaaccgttAGATGTTGCTTTTATGTCTccgttcaaaacattttatgctcAAGAGATTACTACATGGTTGAAACAAAATCCGGGTCGTGTTATAACAGTTTATCAAGTAGGAGAACTTTTTGGAAATGTTTACATGAGAGCTGCTGTTCTAGCTACGGCGGTTAATGGATTCCGAAAACCAGGCCTTTTTCCTGTCAGTCGAAATATTTTCACAGAAGATGAGTTTGTAGCTGAATCGTTAAATGCAGATATTTTTCCACACGAAGTTCTTCCAATCCTAGCGTTACCGGTGGAAGGGATAGAAGAGCCTCTTCATGTAACCTCCCCAAAAGTATCACCCGCCGAATTGTTACCCGCAAAGCTGCAGTTGTCACCAGCACGCCTTACAAAGAAGAATTGGAAACCAGTTTGGCTAAAAGAAGTGTTGCTTCATCATTTAAAGTCGTAA
- Protein Sequence
- MSSQRKKWSKHNMVEAIKTCKEKRMGYNKSSRTFGVPQSTLEGYVQIDKEPEEIVMEKLGRKPVMPEKLEKELVKHCLELEQHYFGVTRKDICKLSFDLCKRNNIKSPFNTYKECAGSKWLAGFLKRNPKLSFRTPQGISYARVKSFTKENVASFFDIYEPLLERVNNDPSRIFNCDETGITIVQHKHQKVIAMKGKKQVAALSSAERGSLMTVVMCFSATGLYIPPLIIFPRKNMKLELMNGMPPGSTHACHLSGWIQQEIFVQWLRHLINHANPTKDNTAVLVLDSHYTHTRNLEVITVAKENNVHIVCLPPHLTNKMQPLDVAFMSPFKTFYAQEITTWLKQNPGRVITVYQVGELFGNVYMRAAVLATAVNGFRKPGLFPVSRNIFTEDEFVAESLNADIFPHEVLPILALPVEGIEEPLHVTSPKVSPAELLPAKLQLSPARLTKKNWKPVWLKEVLLHHLKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01516515; iTF_01516485; iTF_00152651;
- 90% Identity
- iTF_01516515; iTF_01516485;
- 80% Identity
- -