Alei024673.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:246671500-246671961[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 1.5e-05 27.2 0.1 3 35 20 53 18 60 0.91
Sequence Information
- Coding Sequence
- ATGGTTAGAacttatcaaagaaaaataggTGGCCGAACCTATAAGAATTATAGTGGTGAAGACCTTGCAAGAGCCGTTGCAGAAGTTAGAGCAGGTAGACTTACCCAGGCTGCTGCTGCCAAGAAGTACAAAATAAACAGAACTACCATTCTTAACAAGATTCATCACAGGCATGATGGGAAGCCGGGTCACCCCACTGTTTTAACGcctcaaaatgaaaaattacttgCCGATACCTTGACTGTTTTAGCCAATTGGGGGTTTCCGTTGGCAAAGGCTGATGTCCGAACCGTCGTTCAAGTGTTTGTAAATAAGGAGGGTCGAGTTATAAAGCAGTGGAAAGATAACTTGCCGGGTTATGACTTTGTGAATGAGTTTGCAGCTCGGAATAACCTCACGCAGAGACTGGCGACAAATATCAAGGCTTCAAGAGCATCAGTGGGTCCTAACGAGATCAAATAG
- Protein Sequence
- MVRTYQRKIGGRTYKNYSGEDLARAVAEVRAGRLTQAAAAKKYKINRTTILNKIHHRHDGKPGHPTVLTPQNEKLLADTLTVLANWGFPLAKADVRTVVQVFVNKEGRVIKQWKDNLPGYDFVNEFAARNNLTQRLATNIKASRASVGPNEIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00152792;
- 90% Identity
- iTF_00152853; iTF_00152840; iTF_00152785; iTF_00152792;
- 80% Identity
- -