Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.086 9.4 8.7 0.0 2 15 20 33 19 38 0.89

2 3 0.041 4.5 9.7 0.1 26 37 42 53 40 59 0.82

3 3 0.014 1.5 11.2 0.0 1 15 97 111 97 114 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.086	9.4	8.7	0.0	2	15	20	33	19	38	0.89
2	3	0.041	4.5	9.7	0.1	26	37	42	53	40	59	0.82
3	3	0.014	1.5	11.2	0.0	1	15	97	111	97	114	0.92

Coding Sequence: ATGGTGAAATGTTTTCACGTTATAAAAACTCAGCGAGGTGCTGGCGTGAGGTACTCTGAAGATTATTTGCAAAAAGCTATAGAAGATGTAAGAAATGGCAATAAGATCACAAGATTCACATTCTACAATATTCCTAAATCAACACTAAAGTACCGTATTCTGGGCACACGTGGTAAAGGATTCGCTACACGAGTTGGTAGAGGTGGTGGTGGTATCGAATCGTTCTTGTCTGCTGCCGAAGAAGAAAATATCGTGTACTGTTTGAAACGAGGTGCTGGCGTGAGGTACTCTGAAGATGATTTGCAAAAAGCTATAGAAGATGTAAGAAACGGCAATAAGATCCAAGACGAACAGCTACATTCTACAATATTCCTAAATCAACACTAA
Protein Sequence: MVKCFHVIKTQRGAGVRYSEDYLQKAIEDVRNGNKITRFTFYNIPKSTLKYRILGTRGKGFATRVGRGGGGIESFLSAAEEENIVYCLKRGAGVRYSEDDLQKAIEDVRNGNKIQDEQLHSTIFLNQH

Sequence clustering based on sequence similarity using MMseqs2