Alei018042.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069432.1:173540456-173541178[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-10 2e-08 36.4 0.1 4 39 17 52 17 57 0.92
Sequence Information
- Coding Sequence
- ATGAGAAACTACAAACGAAAGACTGCTCAACAAAGTTGGTCAGTAGTTGACATGAAATCTGCAGTAGCTGCTGTAAGGTCTGGCCGCCTTTCTCAAAACAAAGCcgcaaaagaatataaaataccATTAGCCAGCTTACACAGGCGTATAAAGGATAATAAATCTGAAGAGGAAGCATCAACGAAAAAGCTTGGACGATTTCAAACCGTTTTTACGGAAGACCAGGAACTCGCGTTAGTAAAACATATCTTGGATCTAGAGGAAAAATTTTTTGGATTGTCAACGCAGGAACTACGAAAATTAGCTTTTGATTATGcagaacaaaatcaaatttctcataCCTTCAATAAAGAACGAGGTTTGGCTGGAAAATATTGGTTTGGTGCCTTCATCAAAAGGCACCAACAGTTATCTCTAAGAACGCCAGAGAATACATCTGCTGCCAGGGCGTCAGGCTTCAATGCAGTCTCGGTAAAAGCCTTTTTCGACTTGTTGGGCTCGTTACTGGATAAACATTCCTTTCCACCAAGTCGGATTTACAACTGCGACAAAACCGGTATATCAACAGTTcccaataaacaaattaagctGATATCTTTAAAAGGAAAGAAACAAGTCGGAATTTACGGTTCTGGGGAACGTGGAACATTAACTACTgccgaaatttgttttaatgtcacAGGGCACTATATTCCACCATTGCTTGTGATACCTCCGTATTAG
- Protein Sequence
- MRNYKRKTAQQSWSVVDMKSAVAAVRSGRLSQNKAAKEYKIPLASLHRRIKDNKSEEEASTKKLGRFQTVFTEDQELALVKHILDLEEKFFGLSTQELRKLAFDYAEQNQISHTFNKERGLAGKYWFGAFIKRHQQLSLRTPENTSAARASGFNAVSVKAFFDLLGSLLDKHSFPPSRIYNCDKTGISTVPNKQIKLISLKGKKQVGIYGSGERGTLTTAEICFNVTGHYIPPLLVIPPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01515602;
- 90% Identity
- iTF_01284217;
- 80% Identity
- -